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NationalGenomicsInfrastructure / piper

A genomics pipeline build on top of the GATK Queue framework
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Update VQSR parameters #47

Closed johandahlberg closed 9 years ago

johandahlberg commented 9 years ago

I found the following announcement that StrandOddsRatio should replace FisherStrand for VQSR: http://gatkforums.broadinstitute.org/discussion/4958/best-practices-vqsr-parameters-updated#latest