Feature/reduce delivery footprint

NationalGenomicsInfrastructure / piper

A genomics pipeline build on top of the GATK Queue framework

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Closed b97pla closed 8 years ago

b97pla commented 8 years ago

gzip-compress all vcf files (with GATK) by default (implements #66)
don't output base quality score recalibrated (BQSR) bam-file but perform BQSR on-the-fly instead (activated with the --bqsr_onthefly flag)
include the snpEff reference version in version_report.txt

johandahlberg commented 8 years ago

Awesome! It's going to be very interesting to see how much time this shaves of the pipeline.