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NatureGeorge / pdb-profiling

Profiling Protein Structures from Protein Data Bank and integrate various resources.🏄‍♂️
https://pdb-profiling.netlify.app/
MIT License
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id-mapping problem #28

Open Weikang-sun opened 2 years ago

Weikang-sun commented 2 years ago

Describe the bug In the process of ID-mapping with the tool, the error in the screenshot below appeared. In my previous work, I have never encountered it. Excuse me, how can I find the ID in question and how to deal with it? image

To Reproduce command line: pdb_profiling --custom_db gnomad.db insert-mutation --input /data/swift/55file/gnomad_missense_mo_20210401_proteincoding_4col.txt --sep '\t' --usecols ftId,Ref,Pos,Alt

INFO (please complete the following information):

NatureGeorge commented 2 years ago

try the new version: pip install pdb-profiling==0.3.6

Weikang-sun commented 2 years ago

Thank you for helping me solve the problem.

Weikang-sun commented 2 years ago

sorry to disturb you again. but in the "check-muta-conflict" step, something went wrong, as shown in the following screenshot picture: image