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Nealelab / UKBB_ldsc

Sample code for ldsc analyses in UKBB
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Run ldsc locally #1

Open yjqiu opened 5 years ago

yjqiu commented 5 years ago

Hi,

I am not familiar with google cloud and hope to run the anlaysis locally. Is there a way for me to download the files from Google Cloud? For example, I want to get sumstats files but I don't know how to find gs://ukbb-gwas-results/ldsc/

liameabbott commented 5 years ago

Hi,

We don't currently host the sumstats files publicly. If you're interested in running LDSC locally, I would recommend downloading our public GWAS summary statistics files from http://www.nealelab.is/uk-biobank and using the LDSC package's munge_sumstats.py script or your own scripts to pre-process the summary statistics.

Liam

yjqiu commented 5 years ago

I see. Thanks a lot!

On Thu, Dec 20, 2018 at 3:23 PM Liam Abbott notifications@github.com wrote:

Hi,

We don't currently host the sumstats files publicly. If you're interested in running LDSC locally, I would recommend downloading our public GWAS summary statistics files from http://www.nealelab.is/uk-biobank and using the LDSC package's munge_sumstats.py script or your own scripts to pre-process the summary statistics.

Liam

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