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Nealelab / ukb_common

MIT License
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:bug: batch not found #8

Open enryH opened 4 months ago

enryH commented 4 months ago

Hey, when trying to install the package, pip cannot resolve the requirement batch. Which package is it you require?

https://github.com/Nealelab/ukb_common/blob/c46cac78b9472238b83ef55dccd354c9639b74ed/setup.py#L35

I guess it is for the batch_client import?

https://github.com/Nealelab/ukb_common/blob/c46cac78b9472238b83ef55dccd354c9639b74ed/utils/saige_pipeline.py#L344

I got to this error when trying to follow the instructions on the PAN project documentation: here

and I try to install it typing:

pip install git+https://github.com/Nealelab/ukb_common.git

resulting in

ERROR: Could not find a version that satisfies the requirement batch (from ukbb-common) (from versions: none)
ERROR: No matching distribution found for batch
enryH commented 4 months ago

I guess this is due to your typo. So without installing and downloading the repo twice if works:

%%bash
git clone https://github.com/atgu/ukbb_pan_ancestry
git clone https://github.com/Nealelab/ukb_common 
git clone https://github.com/Nealelab/ukb_common ukbb_common