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NelleV / moanin

Timecourse transcriptomic analysis
https://nellev.github.io/moanin/
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Error in lfc provided by DE_timepoints #93

Open epurdom opened 3 years ago

epurdom commented 3 years ago

The log fold change from DE_timepoints is found from topTable in limma, but the p-values and adj pvalues are pulled from the results of the eBayes function (the fit object). However, topTable resorts the results that they provide, so the log-fold change are not getting matched up with the right genes. We need to reorder the lfc from topTable so that they match the right genes from fit.

epurdom commented 3 years ago

Added sort.by="none" in call to topTable in a477b86