How to analyse phosphoproteome data acquired using DDA with reference to the proteome data acquired using DIA?

Nesvilab / FragPipe-Analyst

An easy-to-use and interactive web application for FragPipe

https://fragpipe-analyst-doc.nesvilab.org/

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How to analyse phosphoproteome data acquired using DDA with reference to the proteome data acquired using DIA? #19

Closed YeelonYeoh closed 5 months ago

YeelonYeoh commented 7 months ago

Hi, I want to analyse phosphoproteome data acquired using DDA with reference to the proteome data acquired using DIA. May I get advices for doing so? Perhaps you might refer me to the user's manuals or papers that describe the ways to do so.

hsiaoyi0504 commented 5 months ago

Closed since duplicated with monashProteomics/FragPipe-Analyst#90.