Closed PostoenkoVI closed 5 months ago
Thanks for the feedback. @PostoenkoVI The key thing and the error message is that you have the same values for the "sample" column in the experiment_annotation.tsv. It should be unique. If multiple samples have only one corresponding quantification column in the quantification report, you should edit the experiment_annotation.tsv to match that. It happens when the files are assigned to the same experiment during performing FragPipe data processing.
Hello Fragpipe team!
I was trying to analyze recent LFQ benchmark dataset with FragPipe (LFQ-MBR workflow, DDA mode) and FragPipe Analyst as a follow up for quantitation using https://fragpipe-analyst.org/. I simply took my combined_proteins.tsv and experiment_annotation.tsv files from FragPipe output and uploaded to the website which followed to "Error: duplicate 'row.names' are not allowed".![fragpipe_analyst_out](https://github.com/Nesvilab/FragPipe-Analyst/assets/78644023/29841df0-b64a-4741-80ff-dc72322e9484)
I'm new to fragpipe, so I was unable to locate an error in my fragpipe analyst input formating. I'm uploading an archive with my combined_proteins.tsv and experiment_annotation.tsv files. Any help would be useful.
Version info: FragPipe version 21.1 MSFragger version 4.0 IonQuant version 1.10.12 Philosopher version 5.1.0 FragPipe_output.zip
Thanks in advance!