Nesvilab / FragPipe

A cross-platform proteomics data analysis suite
http://fragpipe.nesvilab.org
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Open search fails on GluC #1351

Closed hspekt closed 11 months ago

hspekt commented 11 months ago

Open search parameters do not seem to work for GluC digest.

Many thanks for any help with this! Works wonderfully on my tryptic digests!

log_2023-11-26_20-08-44.txt.zip

fcyu commented 11 months ago

There are few IDs from the data. Could you double check your sample preparation and parameter settings?

-----|---------------|---------------|---------------|---------------
     |  MS1   (Old)  |  MS1   (New)  |  MS2   (Old)  |  MS2   (New)  
-----|---------------|---------------|---------------|---------------
 Run |  Median  MAD  |  Median  MAD  |  Median  MAD  |  Median  MAD  
 001 | Not enough data to perform mass calibration. Using the uncalibrated data.
-----|---------------|---------------|---------------|---------------
Finding the optimal parameters:
-------|-------|-------|-------|-------|-------|-------|-------|-------
  MS2  |    5  |    7  |   10  |   15  |   20  |   25  |   30  |   50  
-------|-------|-------|-------|-------|-------|-------|-------|-------
 Count |      2|      3|      2| skip rest
-------|-------|-------|-------|-------|-------|-------|-------|-------
-------|-------|-------|-------|-------|-------|-------
 Peaks | 300_0 | 200_0 | 175_0 | 150_1 | 125_1 | 100_1 
-------|-------|-------|-------|-------|-------|-------
 Count |      3|      3|      3|      3|      2| skip rest
-------|-------|-------|-------|-------|-------|-------
-------|-------
 Int.  |    1  
-------|-------
 Count |      2
-------|-------
-------|-------
 Rm P. |    0  
-------|-------
 Count |      3
-------|-------

Best,

Fengchao