Error with spectral library loading

Nesvilab / FragPipe

A cross-platform proteomics data analysis suite

http://fragpipe.nesvilab.org

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Error with spectral library loading #1382

Closed kaupuks closed 10 months ago

kaupuks commented 10 months ago

Describe the issue or question:

Could you help fix the error with spectral library loading (Dia_SecLib_Quant): "Error when loading pyOpenMS libraries! Libraries could not be found / could not be loaded.

To debug this error, please run ldd (on linux), otool -L (on macOS) or dependency walker (on windows) on " log_2023-12-21_05-36-46.zip

Upload your log file (If a log file hasn't been generated, go to the 'Run' tab in FragPipe, click 'Export Log', zip the resulting "log_[date_time].txt" file to avoid truncation, then attach the zipped file by drag & drop here.)

fcyu commented 10 months ago

Although we never saw this error before, I guess it is related to another OpenMS in your computer:

subprocess.CalledProcessError: Command '['C:\\Users\\LENOVO\\AppData\\Local\\Programs\\Python\\Python39\\Scripts\\easypqp.exe', '--version']' returned non-zero exit status 1.
Warning: OPENMS_DATA_PATH environment variable already exists. pyOpenMS will use it (C:\Program Files\OpenMS-3.0.0\share\OpenMS) to locate data in the OpenMS share folder (e.g., the unimod database), instead of the default (C:\Users\LENOVO\AppData\Local\Programs\Python\Python39\lib\site-packages\pyopenms\share/OpenMS).

Could you uninstall the one in C:\Program Files\OpenMS-3.0.0\share\OpenMS and try again?

Thanks,

Fengchao

kaupuks commented 10 months ago

The same error was generated after uninstalling OpenMS. MS data used for processing was acquired with Waters SynaptG2, MSE mode. log_2023-12-21_19-27-46.zip

fcyu commented 10 months ago

I am clueless now since it seems due to your specific computer environment. Maybe @guoci can take a look to give some suggestions.

Best,

Fengchao

guoci commented 10 months ago

@kaupuks Can you try opening up Anaconda prompt, then type: pip install --upgrade --force-reinstall pyopenms I hope this reinstall will resolve the issue, if not you can try raising this issue at the OpenMS GitHub page.

kaupuks commented 10 months ago

Did not help, on another computer, when fresh installed, the same issue.

fcyu commented 10 months ago

Seems to be an issue with OpenMS. Maybe you can try contacting them https://github.com/OpenMS/OpenMS/issues

Best,

Fengchao