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Nesvilab / FragPipe

A cross-platform proteomics data analysis suite
http://fragpipe.nesvilab.org
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N term not a number in TMT integrator version 21.1 #1415

Closed kwebber3 closed 7 months ago

kwebber3 commented 8 months ago

I get the following error: For input string: "N-term(304.2072)": N-term(304.2072) is not a number.

QREEAAR n[305]QREEAAR ARIAIIRK.QREEAAR.KKEEERKA K K 7 3 1.5575 1162.6376 1162.6361 388.5531 388.5526 1162.6378 388.5532 -0.0017 0.14196870000000 16.5990 13.2170 0.9550 2 1 149 155 1999540.4 N-term(304.2072) 0.99 false sp|Q13442|HAP28_HUMAN Q13442 HAP28_HUMAN PDAP1 28 kDa heat- and acid-stable phosphoprotein java.lang.NumberFormatException: For input string: "N-term(304.2072)" at java.base/jdk.internal.math.FloatingDecimal.readJavaFormatString(Unknown Source) at java.base/jdk.internal.math.FloatingDecimal.parseDouble(Unknown Source) at java.base/java.lang.Double.parseDouble(Unknown Source) at TMTIntegrator.UpdateColumns(TMTIntegrator.java:640) at TMTIntegrator.main(TMTIntegrator.java:60)

log_2024-01-18_08-58-57.txt

fcyu commented 8 months ago

Thanks for the bug report. It seems that some columns in the psm.tsv files are not correct. Could you share the result folder with us? If yes, here is the link to upload the files https://www.dropbox.com/request/2x68NDPbu7WjYTDXU9TF

Thanks,

Fengchao

fcyu commented 7 months ago

No response.

kwebber3 commented 6 months ago

Sorry, it is working now for some reason, and I lost the original files.