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Nesvilab / FragPipe

A cross-platform Graphical User Interface (GUI) for running MSFragger and Philosopher - powered pipeline for comprehensive analysis of shotgun proteomics data
http://fragpipe.nesvilab.org
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Python Version #1620

Closed Meera-Asokan closed 2 weeks ago

Meera-Asokan commented 3 weeks ago

Hi team,

Thank you for the amazing software.

I am trying to use DIA-NN and receiving an error that the python version is not detectable. Can you please help resolve this.

Thank you, Meera

log_2024-06-07_10-55-33.txt

fcyu commented 3 weeks ago

H Meera,

Could you open the FragPipe GUI, and configure Python path there?

You could also do a similar configuration in command line mode. Check our tutorial https://fragpipe.nesvilab.org/docs/tutorial_headless.html

Thanks,

Fengchao

Meera-Asokan commented 3 weeks ago

Hi Fengchao,

Thank you for the quick response. I am attaching a screenshot of the GUI here for your reference. @.***

Meera From: Fengchao @.**@.> Sent: Friday, June 7, 2024 12:41 PM To: Nesvilab/FragPipe @.**@.> Cc: Asokan, Meera @.**@.>; Author @.**@.> Subject: Re: [Nesvilab/FragPipe] Python Version (Issue #1620)

H Meera,

Could you open the FragPipe GUI, and configure Python path there?

You could also do a similar configuration in command line mode. Check our tutorial https://fragpipe.nesvilab.org/docs/tutorial_headless.html

Thanks,

Fengchao

- Reply to this email directly, view it on GitHubhttps://github.com/Nesvilab/FragPipe/issues/1620#issuecomment-2155260622, or unsubscribehttps://github.com/notifications/unsubscribe-auth/BJAXFRWVYA5MFCTXZGZYBYTZGHWB5AVCNFSM6AAAAABI65NUJ2VHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDCNJVGI3DANRSGI. You are receiving this because you authored the thread.Message ID: @.**@.>>

fcyu commented 3 weeks ago

I didn't see the screenshot. Could you go to https://github.com/Nesvilab/FragPipe/issues/1620 and paste it there? Replying the email won't get the attachment attached.

Thanks,

Fengchao

Meera-Asokan commented 3 weeks ago

Fragpipe_Python_Error Please find the attached

fcyu commented 3 weeks ago

Hi @Meera-Asokan ,

Thanks for sharing the screenshots. Those two warnings indicate the cause of the error

image image

Best,

Fengchao

Meera-Asokan commented 3 weeks ago

Yes, I downloaded python through the GUI. Can you help me with how to resolve.

Best, Meera

From: Fengchao @.> Sent: Saturday, June 8, 2024 10:45:10 AM To: Nesvilab/FragPipe @.> Cc: Asokan, Meera @.>; Mention @.> Subject: Re: [Nesvilab/FragPipe] Python Version (Issue #1620)

Hi @Meera-Asokanhttps://github.com/Meera-Asokan ,

Thanks for sharing the screenshots. Those two warnings indicate the cause of the error

image.png (view on web)https://github.com/Nesvilab/FragPipe/assets/6926299/26e3b92f-2e69-4252-b5de-27f156319fcb image.png (view on web)https://github.com/Nesvilab/FragPipe/assets/6926299/7bee5fc2-c0c6-4226-9eb2-a54877121826

Best,

Fengchao

— Reply to this email directly, view it on GitHubhttps://github.com/Nesvilab/FragPipe/issues/1620#issuecomment-2156081803, or unsubscribehttps://github.com/notifications/unsubscribe-auth/BJAXFRTGYHUY7C3UJOLBU7DZGMRINAVCNFSM6AAAAABI65NUJ2VHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDCNJWGA4DCOBQGM. You are receiving this because you were mentioned.Message ID: @.***>

fcyu commented 3 weeks ago

What you downloaded is a Python installer. You need to installed it to your computer. We have a brief tutorial here https://fragpipe.nesvilab.org/docs/tutorial_setup_fragpipe.html#:~:text=Download/Update%E2%80%99%20button.-,Optional,-%3A%20install%2C%20update%2C%20or. But I suggest you contact your IT department to install Python for you. It is hard for us to remotely help you installing Python.

Best,

Fengchao