Error happened when analyzing ddaPASEF (glycopeptide) with FragPipe (V22).

Nesvilab / FragPipe

A cross-platform proteomics data analysis suite

http://fragpipe.nesvilab.org

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Error happened when analyzing ddaPASEF (glycopeptide) with FragPipe (V22). #1648

Closed andyzim111 closed 3 months ago

andyzim111 commented 3 months ago

- Upload your log file log_2024-06-26_09-48-59.txt (If a log file hasn't been generated, go to the 'Run' tab in FragPipe, click 'Export Log', zip the resulting "log_[date_time].txt" file to avoid truncation, then attach the zipped file by drag & drop here.)

- Describe the issue or question:

danielgeiszler commented 3 months ago

Are you running this in a directory with old results? Please delete the ptm-shepherd-output folder and rerun PTM-Shepherd.

fcyu commented 3 months ago

Please rerun the whole workflow from scratch.

Best,

Fengchao