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Nesvilab / FragPipe

A cross-platform Graphical User Interface (GUI) for running MSFragger and Philosopher - powered pipeline for comprehensive analysis of shotgun proteomics data
http://fragpipe.nesvilab.org
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Error "java.util.concurrent.ExecutionException: java.lang.OutOfMemoryError: Java heap space #1659

Open VirginiaCarayol opened 3 days ago

VirginiaCarayol commented 3 days ago

Good morning,

As I show in the attached log file, I get the error "java.util.concurrent.ExecutionException: java.lang.OutOfMemoryError: Java heap space".

log_2024-07-01_17-12-54.txt

I have tried setting Workflow > Global settings, RAM = 0 (auto) and Parallelism = 6, but the error persists. Also, I have tried splitting the database, but it is not big enough. I have also tried indicating in MSFragger > Common Options > Calibration and optimizations = None, but the error continues.

I have read in other answers that it may be due to the free RAM memory of the computer, but this is approximately 50.8 GB. On the other hand, I have also increased the Java memory on Windows, but the error persists.

error3 error5 error4

How can I solve that?

Thanks in advance,

Virginia Carayol Gordillo

fcyu commented 3 days ago

I have tried setting Workflow > Global settings, RAM = 0 (auto) and Parallelism = 6, but the error persists. Also, I have tried splitting the database, but it is not big enough. I have also tried indicating in MSFragger > Common Options > Calibration and optimizations = None, but the error continues.

Increase the split database and set calibration and optimization to none should work.

Best,

Fengchao