fcyu
commented
3 months ago Hi Annalisa,
I think it was due to the version incompatibility of the Python packages.
C:\ProgramData\Anaconda3\lib\site-packages\pandas\core\computation\expressions.py:21: UserWarning: Pandas requires version '2.8.4' or newer of 'numexpr' (version '2.7.3' currently installed).
from pandas.core.computation.check import NUMEXPR_INSTALLED
C:\ProgramData\Anaconda3\lib\site-packages\pandas\core\arrays\masked.py:60: UserWarning: Pandas requires version '1.3.6' or newer of 'bottleneck' (version '1.3.2' currently installed).
from pandas.core import (
Traceback (most recent call last):
File "C:\ProgramData\Anaconda3\lib\runpy.py", line 197, in _run_module_as_main
return _run_code(code, main_globals, None,
File "C:\ProgramData\Anaconda3\lib\runpy.py", line 87, in _run_code
exec(code, run_globals)
File "C:\ProgramData\Anaconda3\Scripts\easypqp.exe\__main__.py", line 4, in <module>
File "C:\ProgramData\Anaconda3\lib\site-packages\easypqp\main.py", line 10, in <module>
from .library import generate
File "C:\ProgramData\Anaconda3\lib\site-packages\easypqp\library.py", line 24, in <module>
import statsmodels.api as sm
File "C:\ProgramData\Anaconda3\lib\site-packages\statsmodels\api.py", line 9, in <module>
from . import regression
File "C:\ProgramData\Anaconda3\lib\site-packages\statsmodels\regression\__init__.py", line 1, in <module>
from .linear_model import yule_walker
File "C:\ProgramData\Anaconda3\lib\site-packages\statsmodels\regression\linear_model.py", line 46, in <module>
import statsmodels.base.model as base
File "C:\ProgramData\Anaconda3\lib\site-packages\statsmodels\base\model.py", line 16, in <module>
from statsmodels.tools.numdiff import approx_fprime
File "C:\ProgramData\Anaconda3\lib\site-packages\statsmodels\tools\numdiff.py", line 51, in <module>
EPS = np.MachAr().eps
File "C:\ProgramData\Anaconda3\lib\site-packages\numpy\__init__.py", line 362, in __getattr__
raise AttributeError("module {!r} has no attribute "
AttributeError: module 'numpy' has no attribute 'MachAr'
Traceback (most recent call last):
File "C:\FragPipe\fragpipe-22\tools\speclib\gen_con_spec_lib.py", line 580, in <module>
main()
File "C:\FragPipe\fragpipe-22\tools\speclib\gen_con_spec_lib.py", line 552, in main
main_easypqp(params, irt_df, allcmds, easypqp_convert_cmds)
File "C:\FragPipe\fragpipe-22\tools\speclib\gen_con_spec_lib.py", line 306, in main_easypqp
subprocess.run([os.fspath(params.easypqp), '--version'], check=True)
File "C:\ProgramData\Anaconda3\lib\subprocess.py", line 528, in run
raise CalledProcessError(retcode, process.args,
subprocess.CalledProcessError: Command '['C:\\ProgramData\\Anaconda3\\Scripts\\easypqp.exe', '--version']' returned non-zero exit status 1.
Process 'SpecLibGen' finished, exit code: 1
Process returned non-zero exit code, stoppingCould you run the following command to uninstall and install EasyPQP to see if it will resolve your problem
pip uninstall EasyPQP
pip uninstall pandas
pip uninstall EasyPQPBTW, what is your Pythons version? Also, we normally do not recommend using Anaconda because it has two package management systems: pip and conda, which makes it more complicated.....
Best,
Fengchao
anicastri
log_2024-07-04_13-17-58.zip
Hi, I am writing you as I have an issue running nonspecific- HLA-DIA search with the new FragPipe version v22.0. I am really grateful if you could help me with this. Thank you in advance Annalisa