Python error from split database

Nesvilab / FragPipe

A cross-platform proteomics data analysis suite

http://fragpipe.nesvilab.org

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Python error from split database #1676

Closed hcadre closed 4 months ago

hcadre commented 4 months ago

- Upload your log file log_2024-07-16_15-27-36.txt

- Describe the issue or question: Dear Fengchao, When executing a nonspecific search on two timsTOF DDA runs (6-30 amino acids peptide length; database split to 64) MSFragger exits after going through all 64 database chunks with this error message:

Any idea as to why this might happen?

Python and EasyPQP seem to be properly installed....

Best,

Hannes

fcyu commented 4 months ago

Another Python error.... @guoci can you take a look when you have time?

Thanks,

Fengchao

guoci commented 4 months ago

@hcadre Your installation of pandas might be broken. In Anaconda Prompt, please run pip uninstall pandas conda uninstall pandas to uninstall pandas. Then run pip install easypqp.