Process 'Crystal-C' finished, exit code: 1

[BenSamy2020]

Greetings @fcyu,

I am perfroming open search for 294 .raw file using FragPipeGUI. I hit the error of:

Unhandled Exception: System.Exception: No open raw file. at ThermoFisher.CommonCore.RawFileReader.RawFileAccessBase.ValidateOpenFile() at ThermoFisher.CommonCore.RawFileReader.RawFileAccessBase.GetInstrumentCountOfType(Device type) at DmtAvt.BatmassIo.Thermo.ISourceFactoryImplThermo.SelectDataSource(SelectSourceRequest request) at DmtAvt.BatmassIo.Thermo.BatmassIoThermoServer.ParseIndex(String[] args) at DmtAvt.BatmassIo.Thermo.BatmassIoThermoServer.Main(String[] args) Exception in thread "main" umich.ms.fileio.exceptions.FileParsingException: Could not get ThermoIndex at umich.ms.fileio.filetypes.thermo.ThermoRawFile.parseIndex(ThermoRawFile.java:261) at umich.ms.fileio.filetypes.thermo.ThermoRawFile.fetchIndex(ThermoRawFile.java:212) at umich.ms.fileio.filetypes.thermo.ThermoRawFile.parse(ThermoRawFile.java:642) at umich.ms.datatypes.scancollection.impl.ScanCollectionDefault.loadData(ScanCollectionDefault.java:807) at umich.ms.datatypes.scancollection.impl.ScanCollectionDefault.loadData(ScanCollectionDefault.java:791) at crystalc.p_ReadData.LoadRawFile(p_ReadData.java:196) at crystalc.Run.ProcessPepXML(Run.java:84) at crystalc.Run.main(Run.java:66) Process 'Crystal-C' finished, exit code: 1 Process returned non-zero exit code, stopping

I have attatched my fragpipe workflow file and log file here for your reference. Please do advise me on how to troubleshoot this error?

Regards, Ben

log_2024-09-07_09-15-29.txt fragpipe.txt filelist_proteinprophet.txt

[fcyu]

You accidently set that file to DIA data type, which you shouldn't.

Best,

Fengchao

[BenSamy2020]

Greetings @fcyu,

My bad, thank you!