Questions about running Fragpipe in headless mode on Linux (DIA-NN executable file and location of the Python directory)

[RobAlbn]

I am running Fragpipe in headless mode on Linux, and I have some questions.

I specified the path to the file "fragpipe/tools/diann/1.8.2_beta8/linux/diann-1.8.1.8" as value of the option --config-diann_. Is this the DIA-NN executable file when using Linux? If not, which file path should I specify here?

I also provided location of a Python directory as value of the option --config-python. How can I check if Fragpipe correctly found the required versions of Python and of the Python package easyPQP? Does it stop running and return error messages if it cannot find them?

Thank you very much for any help and support on this.

Best regards, Roberto Albanese

[fcyu]

Is this the DIA-NN executable file when using Linux?

Yes

How can I check if Fragpipe correctly found the required versions of Python and of the Python package easyPQP? Does it stop running and return error messages if it cannot find them?

Yes.

Best,

Fengchao

[RobAlbn]

Thank you very much!