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Nesvilab / FragPipe

A cross-platform proteomics data analysis suite
http://fragpipe.nesvilab.org
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TMT 18 #1915

Open lukasz536 opened 8 hours ago

lukasz536 commented 8 hours ago

Hi, I have a run to analyze a sample treated with TMTpro-134C (reporter ion mass 134.15466). I believe it is part of the TMT 18-plex. However, after installing the newest version, I see that TMT 16 is the highest available. Is there a way to adjust the reporter ion mass to include TMTpro-134C? Alternatively, can I use the table for TMT 18 and run the TMT 16 workflow instead? Thanks! Lukas

fcyu commented 8 hours ago

Yes, you can use the TMT-16 workflow and adjust the related parameters to match the TMT-18's.

Best,

Fengchao