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Nesvilab / FragPipe

A cross-platform proteomics data analysis suite
http://fragpipe.nesvilab.org
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Processing interrupted, stopping PhilosopherReport #195

Closed grazzilybear closed 4 years ago

grazzilybear commented 4 years ago

Please see my attached file.

I am running the LFQ-MBR function but didn't get the result table. It shows "Processing interrupted, stopping PhilosopherReport"

Thanks

fcyu commented 4 years ago

@grazzilybear I am sorry but I canot find the log.

grazzilybear commented 4 years ago

Sorry about this

Please refer to the attached file.

Thanks

all the best

Chia-Feng

Fengchao notifications@github.com 於 2020年6月10日 週三 上午6:31寫道：

@grazzilybear https://github.com/grazzilybear I am sorry but I canot find the log.

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/Nesvilab/FragPipe/issues/195#issuecomment-642011466, or unsubscribe https://github.com/notifications/unsubscribe-auth/AP5ELS5E64AFLUOEJPXALHDRV6DMBANCNFSM4N2LVUVA .

--

Chia-Feng, Tsai, PhD

Pacific Northwest National Laboratory, U.S.A.

E-mail: grazzilybear@gmail.com

System OS: Windows 10, Architecture: AMD64 Java Info: 1.8.0_242, OpenJDK 64-Bit Server VM, AdoptOpenJDK

Version info: FragPipe version 13.0 MSFragger version 3.0 Philosopher version 3.2.7 (build 1591393649)

LCMS files: Experiment/Group: 1_1hr_1

209 commands to execute: WorkspaceCleanInit [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_2] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_2] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --init --nocheck WorkspaceCleanInit [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_3] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_3] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --init --nocheck WorkspaceCleanInit [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_1] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_1] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --init --nocheck WorkspaceCleanInit [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c2_1] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c2_1] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --init --nocheck WorkspaceCleanInit [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr_1] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr_1] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --init --nocheck WorkspaceCleanInit [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c2_2] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c2_2] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --init --nocheck WorkspaceCleanInit [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c2_3] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c2_3] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --init --nocheck WorkspaceCleanInit [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c2_4] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c2_4] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --init --nocheck WorkspaceCleanInit [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr_4] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr_4] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --init --nocheck WorkspaceCleanInit [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c2_5] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c2_5] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --init --nocheck WorkspaceCleanInit [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr_5] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr_5] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --init --nocheck WorkspaceCleanInit [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr_2] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr_2] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --init --nocheck WorkspaceCleanInit [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr_3] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr_3] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --init --nocheck WorkspaceCleanInit [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr_6] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr_6] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --init --nocheck WorkspaceCleanInit [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\Library] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\Library] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --init --nocheck WorkspaceCleanInit [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --init --nocheck WorkspaceCleanInit [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_6] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_6] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --init --nocheck WorkspaceCleanInit [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_4] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_4] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --init --nocheck WorkspaceCleanInit [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_5] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_5] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --init --nocheck MsFragger [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\jre\bin\java.exe -jar -Dfile.encoding=UTF-8 -Xmx27G C:\Experiment\MSfrag\MSFragger-3.0\MSFragger-3.0\MSFragger-3.0.jar C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\fragger.params C:\Experiment\MSfrag\TESTraw\NanoPOT\NanoPOTS_Autosampler_FACS_MCF10A_1_1hr_r1.raw C:\Experiment\MSfrag\TESTraw\NanoPOT\NanoPOTS_Autosampler_FACS_MCF10A_1_1hr_r2.raw C:\Experiment\MSfrag\TESTraw\NanoPOT\NanoPOTS_Autosampler_FACS_MCF10A_1_1hr_r3.raw C:\Experiment\MSfrag\TESTraw\NanoPOT\NanoPOTS_Autosampler_FACS_MCF10A_1_1hr_r4.raw C:\Experiment\MSfrag\TESTraw\NanoPOT\NanoPOTS_Autosampler_FACS_MCF10A_1_1hr_r5.raw C:\Experiment\MSfrag\TESTraw\NanoPOT\NanoPOTS_Autosampler_FACS_MCF10A_1_1hr_r6.raw C:\Experiment\MSfrag\TESTraw\NanoPOT\NanoPOTS_Autosampler_FACS_MCF10A_1_30min_r1.raw C:\Experiment\MSfrag\TESTraw\NanoPOT\NanoPOTS_Autosampler_FACS_MCF10A_1_30min_r2.raw C:\Experiment\MSfrag\TESTraw\NanoPOT\NanoPOTS_Autosampler_FACS_MCF10A_1_30min_r3.raw C:\Experiment\MSfrag\TESTraw\NanoPOT\NanoPOTS_Autosampler_FACS_MCF10A_1_30min_r4.raw C:\Experiment\MSfrag\TESTraw\NanoPOT\NanoPOTS_Autosampler_FACS_MCF10A_1_30min_r5.raw C:\Experiment\MSfrag\TESTraw\NanoPOT\NanoPOTS_Autosampler_FACS_MCF10A_1_30min_r6.raw C:\Experiment\MSfrag\TESTraw\NanoPOT\NanoPOTS_Autosampler_FACS_MCF10A_1_30min_C2_r1.raw C:\Experiment\MSfrag\TESTraw\NanoPOT\NanoPOTS_Autosampler_FACS_MCF10A_1_30min_C2_r2.raw C:\Experiment\MSfrag\TESTraw\NanoPOT\NanoPOTS_Autosampler_FACS_MCF10A_1_30min_C2_r3.raw C:\Experiment\MSfrag\TESTraw\NanoPOT\NanoPOTS_Autosampler_FACS_MCF10A_1_30min_C2_r4.raw C:\Experiment\MSfrag\TESTraw\NanoPOT\NanoPOTS_Autosampler_FACS_MCF10A_1_30min_C2_r5.raw C:\Experiment\MSfrag\TESTraw\NanoPOT\NanoPOTS_Autosampler_FACS_MCF10A_50_1hr_r1_20190923122108.raw C:\Experiment\MSfrag\TESTraw\NanoPOT\NanoPOTS_Autosampler_FACS_MCF10A_50_1hr_r2.raw C:\Experiment\MSfrag\TESTraw\NanoPOT\NanoPOTS_Autosampler_FACS_MCF10A_50_30min_C2_r1.raw C:\Experiment\MSfrag\TESTraw\NanoPOT\NanoPOTS_Autosampler_FACS_MCF10A_50_30min_C2_r2.raw C:\Experiment\MSfrag\TESTraw\NanoPOT\NanoPOTS_Autosampler_FACS_MCF10A_50_30min_r1.raw C:\Experiment\MSfrag\TESTraw\NanoPOT\NanoPOTS_Autosampler_FACS_MCF10A_50_30min_r2.raw MsFragger C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\jre\bin\java.exe -cp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib\fragpipe-13.0.jar com.github.chhh.utils.FileMove C:\Experiment\MSfrag\TESTraw\NanoPOT\NanoPOTS_Autosampler_FACS_MCF10A_1_1hr_r1.pepXML C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr_1\NanoPOTS_Autosampler_FACS_MCF10A_1_1hr_r1.pepXML MsFragger C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\jre\bin\java.exe -cp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib\fragpipe-13.0.jar com.github.chhh.utils.FileMove C:\Experiment\MSfrag\TESTraw\NanoPOT\NanoPOTS_Autosampler_FACS_MCF10A_1_1hr_r2.pepXML C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr_2\NanoPOTS_Autosampler_FACS_MCF10A_1_1hr_r2.pepXML MsFragger C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\jre\bin\java.exe -cp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib\fragpipe-13.0.jar com.github.chhh.utils.FileMove C:\Experiment\MSfrag\TESTraw\NanoPOT\NanoPOTS_Autosampler_FACS_MCF10A_1_1hr_r3.pepXML C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr_3\NanoPOTS_Autosampler_FACS_MCF10A_1_1hr_r3.pepXML MsFragger C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\jre\bin\java.exe -cp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib\fragpipe-13.0.jar com.github.chhh.utils.FileMove C:\Experiment\MSfrag\TESTraw\NanoPOT\NanoPOTS_Autosampler_FACS_MCF10A_1_1hr_r4.pepXML C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr_4\NanoPOTS_Autosampler_FACS_MCF10A_1_1hr_r4.pepXML MsFragger C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\jre\bin\java.exe -cp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib\fragpipe-13.0.jar com.github.chhh.utils.FileMove C:\Experiment\MSfrag\TESTraw\NanoPOT\NanoPOTS_Autosampler_FACS_MCF10A_1_1hr_r5.pepXML C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr_5\NanoPOTS_Autosampler_FACS_MCF10A_1_1hr_r5.pepXML MsFragger C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\jre\bin\java.exe -cp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib\fragpipe-13.0.jar com.github.chhh.utils.FileMove C:\Experiment\MSfrag\TESTraw\NanoPOT\NanoPOTS_Autosampler_FACS_MCF10A_1_1hr_r6.pepXML C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr_6\NanoPOTS_Autosampler_FACS_MCF10A_1_1hr_r6.pepXML MsFragger C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\jre\bin\java.exe -cp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib\fragpipe-13.0.jar com.github.chhh.utils.FileMove C:\Experiment\MSfrag\TESTraw\NanoPOT\NanoPOTS_Autosampler_FACS_MCF10A_1_30min_r1.pepXML C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_1\NanoPOTS_Autosampler_FACS_MCF10A_1_30min_r1.pepXML MsFragger C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\jre\bin\java.exe -cp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib\fragpipe-13.0.jar com.github.chhh.utils.FileMove C:\Experiment\MSfrag\TESTraw\NanoPOT\NanoPOTS_Autosampler_FACS_MCF10A_1_30min_r2.pepXML C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_2\NanoPOTS_Autosampler_FACS_MCF10A_1_30min_r2.pepXML MsFragger C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\jre\bin\java.exe -cp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib\fragpipe-13.0.jar com.github.chhh.utils.FileMove C:\Experiment\MSfrag\TESTraw\NanoPOT\NanoPOTS_Autosampler_FACS_MCF10A_1_30min_r3.pepXML C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_3\NanoPOTS_Autosampler_FACS_MCF10A_1_30min_r3.pepXML MsFragger C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\jre\bin\java.exe -cp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib\fragpipe-13.0.jar com.github.chhh.utils.FileMove C:\Experiment\MSfrag\TESTraw\NanoPOT\NanoPOTS_Autosampler_FACS_MCF10A_1_30min_r4.pepXML C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_4\NanoPOTS_Autosampler_FACS_MCF10A_1_30min_r4.pepXML MsFragger C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\jre\bin\java.exe -cp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib\fragpipe-13.0.jar com.github.chhh.utils.FileMove C:\Experiment\MSfrag\TESTraw\NanoPOT\NanoPOTS_Autosampler_FACS_MCF10A_1_30min_r5.pepXML C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_5\NanoPOTS_Autosampler_FACS_MCF10A_1_30min_r5.pepXML MsFragger C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\jre\bin\java.exe -cp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib\fragpipe-13.0.jar com.github.chhh.utils.FileMove C:\Experiment\MSfrag\TESTraw\NanoPOT\NanoPOTS_Autosampler_FACS_MCF10A_1_30min_r6.pepXML C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_6\NanoPOTS_Autosampler_FACS_MCF10A_1_30min_r6.pepXML MsFragger C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\jre\bin\java.exe -cp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib\fragpipe-13.0.jar com.github.chhh.utils.FileMove C:\Experiment\MSfrag\TESTraw\NanoPOT\NanoPOTS_Autosampler_FACS_MCF10A_1_30min_C2_r1.pepXML C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c2_1\NanoPOTS_Autosampler_FACS_MCF10A_1_30min_C2_r1.pepXML MsFragger C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\jre\bin\java.exe -cp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib\fragpipe-13.0.jar com.github.chhh.utils.FileMove C:\Experiment\MSfrag\TESTraw\NanoPOT\NanoPOTS_Autosampler_FACS_MCF10A_1_30min_C2_r2.pepXML C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c2_2\NanoPOTS_Autosampler_FACS_MCF10A_1_30min_C2_r2.pepXML MsFragger C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\jre\bin\java.exe -cp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib\fragpipe-13.0.jar com.github.chhh.utils.FileMove C:\Experiment\MSfrag\TESTraw\NanoPOT\NanoPOTS_Autosampler_FACS_MCF10A_1_30min_C2_r3.pepXML C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c2_3\NanoPOTS_Autosampler_FACS_MCF10A_1_30min_C2_r3.pepXML MsFragger C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\jre\bin\java.exe -cp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib\fragpipe-13.0.jar com.github.chhh.utils.FileMove C:\Experiment\MSfrag\TESTraw\NanoPOT\NanoPOTS_Autosampler_FACS_MCF10A_1_30min_C2_r4.pepXML C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c2_4\NanoPOTS_Autosampler_FACS_MCF10A_1_30min_C2_r4.pepXML MsFragger C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\jre\bin\java.exe -cp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib\fragpipe-13.0.jar com.github.chhh.utils.FileMove C:\Experiment\MSfrag\TESTraw\NanoPOT\NanoPOTS_Autosampler_FACS_MCF10A_1_30min_C2_r5.pepXML C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c2_5\NanoPOTS_Autosampler_FACS_MCF10A_1_30min_C2_r5.pepXML MsFragger C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\jre\bin\java.exe -cp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib\fragpipe-13.0.jar com.github.chhh.utils.FileMove C:\Experiment\MSfrag\TESTraw\NanoPOT\NanoPOTS_Autosampler_FACS_MCF10A_50_1hr_r1_20190923122108.pepXML C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\Library\NanoPOTS_Autosampler_FACS_MCF10A_50_1hr_r1_20190923122108.pepXML MsFragger C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\jre\bin\java.exe -cp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib\fragpipe-13.0.jar com.github.chhh.utils.FileMove C:\Experiment\MSfrag\TESTraw\NanoPOT\NanoPOTS_Autosampler_FACS_MCF10A_50_1hr_r2.pepXML C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\Library\NanoPOTS_Autosampler_FACS_MCF10A_50_1hr_r2.pepXML MsFragger C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\jre\bin\java.exe -cp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib\fragpipe-13.0.jar com.github.chhh.utils.FileMove C:\Experiment\MSfrag\TESTraw\NanoPOT\NanoPOTS_Autosampler_FACS_MCF10A_50_30min_C2_r1.pepXML C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\Library\NanoPOTS_Autosampler_FACS_MCF10A_50_30min_C2_r1.pepXML MsFragger C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\jre\bin\java.exe -cp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib\fragpipe-13.0.jar com.github.chhh.utils.FileMove C:\Experiment\MSfrag\TESTraw\NanoPOT\NanoPOTS_Autosampler_FACS_MCF10A_50_30min_C2_r2.pepXML C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\Library\NanoPOTS_Autosampler_FACS_MCF10A_50_30min_C2_r2.pepXML MsFragger C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\jre\bin\java.exe -cp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib\fragpipe-13.0.jar com.github.chhh.utils.FileMove C:\Experiment\MSfrag\TESTraw\NanoPOT\NanoPOTS_Autosampler_FACS_MCF10A_50_30min_r1.pepXML C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\Library\NanoPOTS_Autosampler_FACS_MCF10A_50_30min_r1.pepXML MsFragger C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\jre\bin\java.exe -cp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib\fragpipe-13.0.jar com.github.chhh.utils.FileMove C:\Experiment\MSfrag\TESTraw\NanoPOT\NanoPOTS_Autosampler_FACS_MCF10A_50_30min_r2.pepXML C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\Library\NanoPOTS_Autosampler_FACS_MCF10A_50_30min_r2.pepXML PeptideProphet: Workspace init [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\Library\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_50_30min_C2_r1.pepXML-temp] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_2\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_1_30min_r2.pepXML-temp] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_5\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_1_30min_r5.pepXML-temp] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c2_4\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_1_30min_C2_r4.pepXML-temp] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\Library\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_50_1hr_r2.pepXML-temp] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c2_1\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_1_30min_C2_r1.pepXML-temp] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr_2\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_1_1hr_r2.pepXML-temp] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c2_3\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_1_30min_C2_r3.pepXML-temp] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr_5\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_1_1hr_r5.pepXML-temp] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\Library\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_50_30min_r2.pepXML-temp] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_3\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_1_30min_r3.pepXML-temp] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\Library\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_50_30min_C2_r2.pepXML-temp] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\Library\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_50_1hr_r1_20190923122108.pepXML-temp] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_6\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_1_30min_r6.pepXML-temp] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr_4\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_1_1hr_r4.pepXML-temp] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c2_5\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_1_30min_C2_r5.pepXML-temp] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr_1\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_1_1hr_r1.pepXML-temp] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_1\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_1_30min_r1.pepXML-temp] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_4\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_1_30min_r4.pepXML-temp] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c2_2\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_1_30min_C2_r2.pepXML-temp] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr_3\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_1_1hr_r3.pepXML-temp] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr_6\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_1_1hr_r6.pepXML-temp] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\Library\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_50_30min_r1.pepXML-temp] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe workspace --init --nocheck PeptideProphet [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\Library\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_50_30min_C2r1.pepXML-temp] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database C:\Experiment\MSfrag\2020-06-09-decoys-reviewed-contam-UP000005640.fas ..\NanoPOTS_Autosampler_FACS_MCF10A_50_30min_C2_r1.pepXML PeptideProphet [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_2\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_1_30minr2.pepXML-temp] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database C:\Experiment\MSfrag\2020-06-09-decoys-reviewed-contam-UP000005640.fas ..\NanoPOTS_Autosampler_FACS_MCF10A_1_30min_r2.pepXML PeptideProphet [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_5\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_1_30minr5.pepXML-temp] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database C:\Experiment\MSfrag\2020-06-09-decoys-reviewed-contam-UP000005640.fas ..\NanoPOTS_Autosampler_FACS_MCF10A_1_30min_r5.pepXML PeptideProphet [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c2_4\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_1_30min_C2r4.pepXML-temp] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database C:\Experiment\MSfrag\2020-06-09-decoys-reviewed-contam-UP000005640.fas ..\NanoPOTS_Autosampler_FACS_MCF10A_1_30min_C2_r4.pepXML PeptideProphet [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\Library\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_50_1hrr2.pepXML-temp] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database C:\Experiment\MSfrag\2020-06-09-decoys-reviewed-contam-UP000005640.fas ..\NanoPOTS_Autosampler_FACS_MCF10A_50_1hr_r2.pepXML PeptideProphet [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c2_1\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_1_30min_C2r1.pepXML-temp] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database C:\Experiment\MSfrag\2020-06-09-decoys-reviewed-contam-UP000005640.fas ..\NanoPOTS_Autosampler_FACS_MCF10A_1_30min_C2_r1.pepXML PeptideProphet [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr_2\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_1_1hrr2.pepXML-temp] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database C:\Experiment\MSfrag\2020-06-09-decoys-reviewed-contam-UP000005640.fas ..\NanoPOTS_Autosampler_FACS_MCF10A_1_1hr_r2.pepXML PeptideProphet [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c2_3\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_1_30min_C2r3.pepXML-temp] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database C:\Experiment\MSfrag\2020-06-09-decoys-reviewed-contam-UP000005640.fas ..\NanoPOTS_Autosampler_FACS_MCF10A_1_30min_C2_r3.pepXML PeptideProphet [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr_5\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_1_1hrr5.pepXML-temp] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database C:\Experiment\MSfrag\2020-06-09-decoys-reviewed-contam-UP000005640.fas ..\NanoPOTS_Autosampler_FACS_MCF10A_1_1hr_r5.pepXML PeptideProphet [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\Library\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_50_30minr2.pepXML-temp] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database C:\Experiment\MSfrag\2020-06-09-decoys-reviewed-contam-UP000005640.fas ..\NanoPOTS_Autosampler_FACS_MCF10A_50_30min_r2.pepXML PeptideProphet [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_3\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_1_30minr3.pepXML-temp] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database C:\Experiment\MSfrag\2020-06-09-decoys-reviewed-contam-UP000005640.fas ..\NanoPOTS_Autosampler_FACS_MCF10A_1_30min_r3.pepXML PeptideProphet [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\Library\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_50_30min_C2r2.pepXML-temp] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database C:\Experiment\MSfrag\2020-06-09-decoys-reviewed-contam-UP000005640.fas ..\NanoPOTS_Autosampler_FACS_MCF10A_50_30min_C2_r2.pepXML PeptideProphet [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\Library\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_50_1hr_r120190923122108.pepXML-temp] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database C:\Experiment\MSfrag\2020-06-09-decoys-reviewed-contam-UP000005640.fas ..\NanoPOTS_Autosampler_FACS_MCF10A_50_1hr_r1_20190923122108.pepXML PeptideProphet [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_6\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_1_30minr6.pepXML-temp] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database C:\Experiment\MSfrag\2020-06-09-decoys-reviewed-contam-UP000005640.fas ..\NanoPOTS_Autosampler_FACS_MCF10A_1_30min_r6.pepXML PeptideProphet [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr_4\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_1_1hrr4.pepXML-temp] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database C:\Experiment\MSfrag\2020-06-09-decoys-reviewed-contam-UP000005640.fas ..\NanoPOTS_Autosampler_FACS_MCF10A_1_1hr_r4.pepXML PeptideProphet [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c2_5\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_1_30min_C2r5.pepXML-temp] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database C:\Experiment\MSfrag\2020-06-09-decoys-reviewed-contam-UP000005640.fas ..\NanoPOTS_Autosampler_FACS_MCF10A_1_30min_C2_r5.pepXML PeptideProphet [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr_1\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_1_1hrr1.pepXML-temp] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database C:\Experiment\MSfrag\2020-06-09-decoys-reviewed-contam-UP000005640.fas ..\NanoPOTS_Autosampler_FACS_MCF10A_1_1hr_r1.pepXML PeptideProphet [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_1\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_1_30minr1.pepXML-temp] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database C:\Experiment\MSfrag\2020-06-09-decoys-reviewed-contam-UP000005640.fas ..\NanoPOTS_Autosampler_FACS_MCF10A_1_30min_r1.pepXML PeptideProphet [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_4\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_1_30minr4.pepXML-temp] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database C:\Experiment\MSfrag\2020-06-09-decoys-reviewed-contam-UP000005640.fas ..\NanoPOTS_Autosampler_FACS_MCF10A_1_30min_r4.pepXML PeptideProphet [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c2_2\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_1_30min_C2r2.pepXML-temp] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database C:\Experiment\MSfrag\2020-06-09-decoys-reviewed-contam-UP000005640.fas ..\NanoPOTS_Autosampler_FACS_MCF10A_1_30min_C2_r2.pepXML PeptideProphet [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr_3\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_1_1hrr3.pepXML-temp] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database C:\Experiment\MSfrag\2020-06-09-decoys-reviewed-contam-UP000005640.fas ..\NanoPOTS_Autosampler_FACS_MCF10A_1_1hr_r3.pepXML PeptideProphet [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr_6\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_1_1hrr6.pepXML-temp] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database C:\Experiment\MSfrag\2020-06-09-decoys-reviewed-contam-UP000005640.fas ..\NanoPOTS_Autosampler_FACS_MCF10A_1_1hr_r6.pepXML PeptideProphet [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\Library\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_50_30minr1.pepXML-temp] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database C:\Experiment\MSfrag\2020-06-09-decoys-reviewed-contam-UP000005640.fas ..\NanoPOTS_Autosampler_FACS_MCF10A_50_30min_r1.pepXML PeptideProphet: Delete temp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\jre\bin\java.exe -cp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib\fragpipe-13.0.jar com.github.chhh.utils.FileDelete C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\Library\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_50_30min_C2_r1.pepXML-temp PeptideProphet: Delete temp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\jre\bin\java.exe -cp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib\fragpipe-13.0.jar com.github.chhh.utils.FileDelete C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_2\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_1_30min_r2.pepXML-temp PeptideProphet: Delete temp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\jre\bin\java.exe -cp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib\fragpipe-13.0.jar com.github.chhh.utils.FileDelete C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_5\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_1_30min_r5.pepXML-temp PeptideProphet: Delete temp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\jre\bin\java.exe -cp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib\fragpipe-13.0.jar com.github.chhh.utils.FileDelete C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c2_4\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_1_30min_C2_r4.pepXML-temp PeptideProphet: Delete temp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\jre\bin\java.exe -cp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib\fragpipe-13.0.jar com.github.chhh.utils.FileDelete C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\Library\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_50_1hr_r2.pepXML-temp PeptideProphet: Delete temp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\jre\bin\java.exe -cp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib\fragpipe-13.0.jar com.github.chhh.utils.FileDelete C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c2_1\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_1_30min_C2_r1.pepXML-temp PeptideProphet: Delete temp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\jre\bin\java.exe -cp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib\fragpipe-13.0.jar com.github.chhh.utils.FileDelete C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr_2\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_1_1hr_r2.pepXML-temp PeptideProphet: Delete temp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\jre\bin\java.exe -cp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib\fragpipe-13.0.jar com.github.chhh.utils.FileDelete C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c2_3\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_1_30min_C2_r3.pepXML-temp PeptideProphet: Delete temp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\jre\bin\java.exe -cp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib\fragpipe-13.0.jar com.github.chhh.utils.FileDelete C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr_5\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_1_1hr_r5.pepXML-temp PeptideProphet: Delete temp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\jre\bin\java.exe -cp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib\fragpipe-13.0.jar com.github.chhh.utils.FileDelete C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\Library\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_50_30min_r2.pepXML-temp PeptideProphet: Delete temp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\jre\bin\java.exe -cp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib\fragpipe-13.0.jar com.github.chhh.utils.FileDelete C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_3\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_1_30min_r3.pepXML-temp PeptideProphet: Delete temp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\jre\bin\java.exe -cp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib\fragpipe-13.0.jar com.github.chhh.utils.FileDelete C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\Library\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_50_30min_C2_r2.pepXML-temp PeptideProphet: Delete temp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\jre\bin\java.exe -cp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib\fragpipe-13.0.jar com.github.chhh.utils.FileDelete C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\Library\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_50_1hr_r1_20190923122108.pepXML-temp PeptideProphet: Delete temp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\jre\bin\java.exe -cp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib\fragpipe-13.0.jar com.github.chhh.utils.FileDelete C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_6\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_1_30min_r6.pepXML-temp PeptideProphet: Delete temp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\jre\bin\java.exe -cp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib\fragpipe-13.0.jar com.github.chhh.utils.FileDelete C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr_4\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_1_1hr_r4.pepXML-temp PeptideProphet: Delete temp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\jre\bin\java.exe -cp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib\fragpipe-13.0.jar com.github.chhh.utils.FileDelete C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c2_5\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_1_30min_C2_r5.pepXML-temp PeptideProphet: Delete temp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\jre\bin\java.exe -cp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib\fragpipe-13.0.jar com.github.chhh.utils.FileDelete C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr_1\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_1_1hr_r1.pepXML-temp PeptideProphet: Delete temp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\jre\bin\java.exe -cp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib\fragpipe-13.0.jar com.github.chhh.utils.FileDelete C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_1\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_1_30min_r1.pepXML-temp PeptideProphet: Delete temp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\jre\bin\java.exe -cp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib\fragpipe-13.0.jar com.github.chhh.utils.FileDelete C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_4\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_1_30min_r4.pepXML-temp PeptideProphet: Delete temp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\jre\bin\java.exe -cp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib\fragpipe-13.0.jar com.github.chhh.utils.FileDelete C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c2_2\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_1_30min_C2_r2.pepXML-temp PeptideProphet: Delete temp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\jre\bin\java.exe -cp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib\fragpipe-13.0.jar com.github.chhh.utils.FileDelete C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr_3\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_1_1hr_r3.pepXML-temp PeptideProphet: Delete temp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\jre\bin\java.exe -cp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib\fragpipe-13.0.jar com.github.chhh.utils.FileDelete C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr_6\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_1_1hr_r6.pepXML-temp PeptideProphet: Delete temp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\jre\bin\java.exe -cp C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib\fragpipe-13.0.jar com.github.chhh.utils.FileDelete C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\Library\fragpipe-NanoPOTS_Autosampler_FACS_MCF10A_50_30min_r1.pepXML-temp ProteinProphet [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe proteinprophet --maxppmdiff 2000000 --output combined C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\Library\interact-NanoPOTS_Autosampler_FACS_MCF10A_50_30min_C2_r1.pep.xml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_2\interact-NanoPOTS_Autosampler_FACS_MCF10A_1_30min_r2.pep.xml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_5\interact-NanoPOTS_Autosampler_FACS_MCF10A_1_30min_r5.pep.xml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\Library\interact-NanoPOTS_Autosampler_FACS_MCF10A_50_1hr_r2.pep.xml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c2_4\interact-NanoPOTS_Autosampler_FACS_MCF10A_1_30min_C2_r4.pep.xml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c2_1\interact-NanoPOTS_Autosampler_FACS_MCF10A_1_30min_C2_r1.pep.xml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c2_3\interact-NanoPOTS_Autosampler_FACS_MCF10A_1_30min_C2_r3.pep.xml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr_2\interact-NanoPOTS_Autosampler_FACS_MCF10A_1_1hr_r2.pep.xml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\Library\interact-NanoPOTS_Autosampler_FACS_MCF10A_50_30min_r2.pep.xml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr_5\interact-NanoPOTS_Autosampler_FACS_MCF10A_1_1hr_r5.pep.xml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\Library\interact-NanoPOTS_Autosampler_FACS_MCF10A_50_30min_C2_r2.pep.xml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_3\interact-NanoPOTS_Autosampler_FACS_MCF10A_1_30min_r3.pep.xml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\Library\interact-NanoPOTS_Autosampler_FACS_MCF10A_50_1hr_r1_20190923122108.pep.xml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_6\interact-NanoPOTS_Autosampler_FACS_MCF10A_1_30min_r6.pep.xml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr_4\interact-NanoPOTS_Autosampler_FACS_MCF10A_1_1hr_r4.pep.xml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c2_5\interact-NanoPOTS_Autosampler_FACS_MCF10A_1_30min_C2_r5.pep.xml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr_1\interact-NanoPOTS_Autosampler_FACS_MCF10A_1_1hr_r1.pep.xml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_1\interact-NanoPOTS_Autosampler_FACS_MCF10A_1_30min_r1.pep.xml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_4\interact-NanoPOTS_Autosampler_FACS_MCF10A_1_30min_r4.pep.xml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c2_2\interact-NanoPOTS_Autosampler_FACS_MCF10A_1_30min_C2_r2.pep.xml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr_3\interact-NanoPOTS_Autosampler_FACS_MCF10A_1_1hr_r3.pep.xml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr_6\interact-NanoPOTS_Autosampler_FACS_MCF10A_1_1hr_r6.pep.xml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\Library\interact-NanoPOTS_Autosampler_FACS_MCF10A_50_30min_r1.pep.xml PhilosopherDbAnnotate [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins2] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe database --annotate C:\Experiment\MSfrag\2020-06-09-decoys-reviewed-contam-UP000005640.fas --prefix rev PhilosopherDbAnnotate [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins3] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe database --annotate C:\Experiment\MSfrag\2020-06-09-decoys-reviewed-contam-UP000005640.fas --prefix rev PhilosopherDbAnnotate [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins1] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe database --annotate C:\Experiment\MSfrag\2020-06-09-decoys-reviewed-contam-UP000005640.fas --prefix rev PhilosopherDbAnnotate [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c21] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe database --annotate C:\Experiment\MSfrag\2020-06-09-decoys-reviewed-contam-UP000005640.fas --prefix rev PhilosopherDbAnnotate [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr1] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe database --annotate C:\Experiment\MSfrag\2020-06-09-decoys-reviewed-contam-UP000005640.fas --prefix rev PhilosopherDbAnnotate [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c22] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe database --annotate C:\Experiment\MSfrag\2020-06-09-decoys-reviewed-contam-UP000005640.fas --prefix rev PhilosopherDbAnnotate [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c23] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe database --annotate C:\Experiment\MSfrag\2020-06-09-decoys-reviewed-contam-UP000005640.fas --prefix rev PhilosopherDbAnnotate [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c24] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe database --annotate C:\Experiment\MSfrag\2020-06-09-decoys-reviewed-contam-UP000005640.fas --prefix rev PhilosopherDbAnnotate [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr4] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe database --annotate C:\Experiment\MSfrag\2020-06-09-decoys-reviewed-contam-UP000005640.fas --prefix rev PhilosopherDbAnnotate [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c25] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe database --annotate C:\Experiment\MSfrag\2020-06-09-decoys-reviewed-contam-UP000005640.fas --prefix rev PhilosopherDbAnnotate [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr5] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe database --annotate C:\Experiment\MSfrag\2020-06-09-decoys-reviewed-contam-UP000005640.fas --prefix rev PhilosopherDbAnnotate [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr2] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe database --annotate C:\Experiment\MSfrag\2020-06-09-decoys-reviewed-contam-UP000005640.fas --prefix rev PhilosopherDbAnnotate [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr3] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe database --annotate C:\Experiment\MSfrag\2020-06-09-decoys-reviewed-contam-UP000005640.fas --prefix rev PhilosopherDbAnnotate [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr6] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe database --annotate C:\Experiment\MSfrag\2020-06-09-decoys-reviewed-contam-UP000005640.fas --prefix rev PhilosopherDbAnnotate [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\Library] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe database --annotate C:\Experiment\MSfrag\2020-06-09-decoys-reviewed-contam-UP000005640.fas --prefix rev PhilosopherDbAnnotate [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe database --annotate C:\Experiment\MSfrag\2020-06-09-decoys-reviewed-contam-UP000005640.fas --prefix rev PhilosopherDbAnnotate [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins6] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe database --annotate C:\Experiment\MSfrag\2020-06-09-decoys-reviewed-contam-UP000005640.fas --prefix rev PhilosopherDbAnnotate [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins4] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe database --annotate C:\Experiment\MSfrag\2020-06-09-decoys-reviewed-contam-UP000005640.fas --prefix rev PhilosopherDbAnnotate [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins5] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe database --annotate C:\Experiment\MSfrag\2020-06-09-decoys-reviewed-contam-UP000005640.fas --prefix rev PhilosopherFilter [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr2] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe filter --sequential --razor --prot 0.01 --tag rev --pepxml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr_2 --protxml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\combined.prot.xml PhilosopherFilter [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr5] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe filter --sequential --razor --prot 0.01 --tag rev --pepxml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr_5 --protxml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\combined.prot.xml PhilosopherFilter [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c24] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe filter --sequential --razor --prot 0.01 --tag rev --pepxml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c2_4 --protxml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\combined.prot.xml PhilosopherFilter [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr4] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe filter --sequential --razor --prot 0.01 --tag rev --pepxml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr_4 --protxml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\combined.prot.xml PhilosopherFilter [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c21] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe filter --sequential --razor --prot 0.01 --tag rev --pepxml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c2_1 --protxml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\combined.prot.xml PhilosopherFilter [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr3] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe filter --sequential --razor --prot 0.01 --tag rev --pepxml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr_3 --protxml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\combined.prot.xml PhilosopherFilter [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c25] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe filter --sequential --razor --prot 0.01 --tag rev --pepxml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c2_5 --protxml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\combined.prot.xml PhilosopherFilter [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins3] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe filter --sequential --razor --prot 0.01 --tag rev --pepxml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_3 --protxml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\combined.prot.xml PhilosopherFilter [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr1] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe filter --sequential --razor --prot 0.01 --tag rev --pepxml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr_1 --protxml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\combined.prot.xml PhilosopherFilter [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins1] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe filter --sequential --razor --prot 0.01 --tag rev --pepxml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_1 --protxml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\combined.prot.xml PhilosopherFilter [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins5] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe filter --sequential --razor --prot 0.01 --tag rev --pepxml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_5 --protxml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\combined.prot.xml PhilosopherFilter [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins2] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe filter --sequential --razor --prot 0.01 --tag rev --pepxml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_2 --protxml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\combined.prot.xml PhilosopherFilter [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c23] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe filter --sequential --razor --prot 0.01 --tag rev --pepxml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c2_3 --protxml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\combined.prot.xml PhilosopherFilter [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c22] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe filter --sequential --razor --prot 0.01 --tag rev --pepxml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c2_2 --protxml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\combined.prot.xml PhilosopherFilter [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins6] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe filter --sequential --razor --prot 0.01 --tag rev --pepxml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_6 --protxml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\combined.prot.xml PhilosopherFilter [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins4] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe filter --sequential --razor --prot 0.01 --tag rev --pepxml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_4 --protxml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\combined.prot.xml PhilosopherFilter [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr6] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe filter --sequential --razor --prot 0.01 --tag rev --pepxml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr6 --protxml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\combined.prot.xml PhilosopherFilter [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\Library] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe filter --sequential --razor --prot 0.01 --tag rev --pepxml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\Library --protxml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\combined.prot.xml PhilosopherReport [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_2] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe report PhilosopherReport [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_3] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe report PhilosopherReport [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_1] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe report PhilosopherReport [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c2_1] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe report PhilosopherReport [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr_1] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe report PhilosopherReport [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c2_2] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe report PhilosopherReport [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c2_3] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe report PhilosopherReport [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c2_4] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe report PhilosopherReport [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr_4] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe report PhilosopherReport [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30mins_c2_5] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe report PhilosopherReport [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr_5] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe report PhilosopherReport [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr_2] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe report PhilosopherReport [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr_3] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe report PhilosopherReport [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_1hr_6] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe report PhilosopherReport [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\Library] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe report PhilosopherReport [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_6] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe report PhilosopherReport [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_4] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe report PhilosopherReport [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins5] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe report iProphet [Work dir: C:\Experiment\MSfrag\TESTraw\NanoPOT\Result] C:\Experiment\MSfrag\FragPipe-jre-13.0\fragpipe\lib..\tools\philosopher\philosopher.exe iprophet --decoy rev --nonsp --output combined --threads 7 C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\Library\interact-NanoPOTS_Autosampler_FACS_MCF10A_50_30min_C2_r1.pep.xml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_2\interact-NanoPOTS_Autosampler_FACS_MCF10A_1_30min_r2.pep.xml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\1_30imins_5\interact-NanoPOTS_Autosampler_FACS_MCF10A_1_30min_r5.pep.xml C:\Experiment\MSfrag\TESTraw\NanoPOT\Result\Library\interact-NanoPOTS_Autosampler_FACS_MCF10A_50_1hr_r2.pep.xml C:\Experime

fcyu commented 4 years ago

Looks like your attached log is not complete. GitHub may cut the message if it is too long. Could you send the log file to yufe@umich.edu?

Thanks,

Fengchao

prvst commented 4 years ago

@grazzilybear The error is happening because your database search results do not contain any valid results (PSMs). The peptide validation failed for all charge state models, and ProteinProphet only found 250 proteins. It looks like you are working with a FACS, so you probably have a complex data regarding the number of cells and proteins. I suggest that you review your database search parameters, and double-check if your mass spectrometer data looks OK.

grazzilybear commented 4 years ago

Thanks. We have done the search by Maxquant and MSGF+ before for these single cell data. It works. We tried another FACS results (only 4 experiments). It also looks also ok and shows the MSFragger showed us a better result than Maxquant. That’s why we want to try to use more experiments for MSFragger search. Anything I need to pay attention to the search parameters?

Felipe Leprevost notifications@github.com於 2020年6月10日 週三，上午11:07寫道：

@grazzilybear https://github.com/grazzilybear The error is happening because your database search results do not contain any valid results (PSMs). The peptide validation failed for all charge state models, and ProteinProphet only found 250 proteins. It looks like you are working with a FACS, so you probably have a complex data regarding the number of cells and proteins. I suggest that you review your database search parameters, and double-check if your mass spectrometer data looks OK.

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/Nesvilab/FragPipe/issues/195#issuecomment-642172805, or unsubscribe https://github.com/notifications/unsubscribe-auth/AP5ELSYOHSP4KI5BYNDEYWDRV7DU5ANCNFSM4N2LVUVA .

--

Chia-Feng, Tsai, PhD

Pacific Northwest National Laboratory, U.S.A.

E-mail: grazzilybear@gmail.com

anesvi commented 4 years ago

This is strange then

Can you convert to mzML and try?

Is this high mass accuracy MS/MS, human data ?

From: grazzilybear notifications@github.com Sent: Wednesday, June 10, 2020 2:14 PM To: Nesvilab/FragPipe FragPipe@noreply.github.com Cc: Subscribed subscribed@noreply.github.com Subject: Re: [Nesvilab/FragPipe] Processing interrupted, stopping PhilosopherReport (#195)

External Email - Use Caution Thanks. We have done the search by Maxquant and MSGF+ before for these single cell data. It works. We tried another FACS results (only 4 experiments). It also looks also ok and shows the MSFragger showed us a better result than Maxquant. That’s why we want to try to use more experiments for MSFragger search. Anything I need to pay attention to the search parameters?

Felipe Leprevost notifications@github.com<mailto:notifications@github.com>於 2020年6月10日 週三，上午11:07寫道：

@grazzilybear https://github.com/grazzilybear The error is happening because your database search results do not contain any valid results (PSMs). The peptide validation failed for all charge state models, and ProteinProphet only found 250 proteins. It looks like you are working with a FACS, so you probably have a complex data regarding the number of cells and proteins. I suggest that you review your database search parameters, and double-check if your mass spectrometer data looks OK.

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/Nesvilab/FragPipe/issues/195#issuecomment-642172805, or unsubscribe https://github.com/notifications/unsubscribe-auth/AP5ELSYOHSP4KI5BYNDEYWDRV7DU5ANCNFSM4N2LVUVA .

--

Chia-Feng, Tsai, PhD

Pacific Northwest National Laboratory, U.S.A.

E-mail: grazzilybear@gmail.commailto:grazzilybear@gmail.com

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHubhttps://github.com/Nesvilab/FragPipe/issues/195#issuecomment-642176193, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AIIMM6YAHVA3L5QRCEHECYLRV7EPVANCNFSM4N2LVUVA.

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prvst commented 4 years ago

@grazzilybear, please check your inbox

grazzilybear commented 4 years ago

Thanks, I can try to convert to mzML. Yes, this is sorting MCF10A single cell and also 50 cells. We want to use 50 cells as library for MBR.

Thanks

all the best Chia-Feng

Alexey Nesvizhskii notifications@github.com於 2020年6月10日 週三，上午11:16寫道：

This is strange then

Can you convert to mzML and try?

Is this high mass accuracy MS/MS, human data ?

From: grazzilybear notifications@github.com Sent: Wednesday, June 10, 2020 2:14 PM To: Nesvilab/FragPipe FragPipe@noreply.github.com Cc: Subscribed subscribed@noreply.github.com Subject: Re: [Nesvilab/FragPipe] Processing interrupted, stopping PhilosopherReport (#195)

External Email - Use Caution Thanks. We have done the search by Maxquant and MSGF+ before for these single cell data. It works. We tried another FACS results (only 4 experiments). It also looks also ok and shows the MSFragger showed us a better result than Maxquant. That’s why we want to try to use more experiments for MSFragger search. Anything I need to pay attention to the search parameters?

Felipe Leprevost notifications@github.com<mailto:notifications@github.com>於 2020年6月10日 週三，上午11:07寫道：

@grazzilybear https://github.com/grazzilybear The error is happening because your database search results do not contain any valid results (PSMs). The peptide validation failed for all charge state models, and ProteinProphet only found 250 proteins. It looks like you are working with a FACS, so you probably have a complex data regarding the number of cells and proteins. I suggest that you review your database search parameters, and double-check if your mass spectrometer data looks OK.

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/Nesvilab/FragPipe/issues/195#issuecomment-642172805,

or unsubscribe < https://github.com/notifications/unsubscribe-auth/AP5ELSYOHSP4KI5BYNDEYWDRV7DU5ANCNFSM4N2LVUVA>

.

--

Chia-Feng, Tsai, PhD

Pacific Northwest National Laboratory, U.S.A.

E-mail: grazzilybear@gmail.commailto:grazzilybear@gmail.com

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub< https://github.com/Nesvilab/FragPipe/issues/195#issuecomment-642176193>, or unsubscribe< https://github.com/notifications/unsubscribe-auth/AIIMM6YAHVA3L5QRCEHECYLRV7EPVANCNFSM4N2LVUVA>.

Electronic Mail is not secure, may not be read every day, and should not be used for urgent or sensitive issues

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/Nesvilab/FragPipe/issues/195#issuecomment-642177485, or unsubscribe https://github.com/notifications/unsubscribe-auth/AP5ELSYHGYNDBNXVZ7GPBSDRV7EYTANCNFSM4N2LVUVA .