fcyu
commented
3 years ago We don’t support the .d without ion mobility. Please convert it to mzML with msconverter.
Best,
Fengchao
On Fri, 27 Aug 2021 at 6:55 AM, hmehmetkayili @.***> wrote:
We have a Bruker TIMS-TOF MS system. We tried to analyze our data (these data was obtained from QTOF experiments without ion mobility) with Fragpipe with MSfragger and phlisopeher for N-glycopeptide analysis using glyco-N-LFQ workflow. When we insert our data to FragPipe as .d format ,we got an error masssage described below:
Failed in checking ...d Not a valid pathDir for Bruker data directory Failed in checking spectral files.
log_2021-08-27_13-54-39.txt https://github.com/Nesvilab/FragPipe/files/7066420/log_2021-08-27_13-54-39.txt
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Dear Developers, We have a Bruker TIMS-TOF MS system. We tried to analyze our data (these data was obtained from QTOF experiments without ion mobility) with Fragpipe including MSfragger 3.3 and philosopher for N-glycopeptide analysis using glyco-N-LFQ workflow. When we insert our data to FragPipe as .d format ,we got an error masssage described below:
Failed in checking ...d Not a valid pathDir for Bruker data directory Failed in checking spectral files.
How we solve the problem? Should we convert the data to mzML file format as described in the tutorial?
Best, Mehmet