Q: Phosphoproteomics data

Nesvilab / FragPipeAnalystR

https://www.nesvilab.org/FragPipeAnalystR/

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Q: Phosphoproteomics data #2

Open kaupuks opened 4 months ago

kaupuks commented 4 months ago

Do you have an example (tutorial) how to analyze LFQ phosphoproteomics data?

hsiaoyi0504 commented 3 months ago

@kaupuks We currently don't have one, but if you have any recommended data, I maybe could create one.

kaupuks commented 3 months ago

I have my own data processed using the FragPipe 21.1 LFQ-Phospho workflow. Twelve samples (six healthy tissue, six pancreatic cancer), about 2500 phosphosites. Maybe it would be suitable for demonstration purposes?

hsiaoyi0504 commented 3 months ago

@kaupuks It's definitely suited. Do you want to contact me through email for the follow-up? Or I am preparing some tutorials for the LFQ-Phospho analysis. It might take a little longer. I am also not sure if that's a public available data?