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Nesvilab / MSFragger

Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics
https://msfragger.nesvilab.org
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Help for a beginner #121

Closed Debora211088 closed 3 years ago

Debora211088 commented 3 years ago

Dear all,

Please, I am a beginner using MSFRagger, and I have some doubts about it.

First, I have some TMT data to analyze. However, there is no reference channel. Should I set the reference channel as being Virtual?

The second question is about a message that appears in the Mass calibration and parameter optimization step. For all runs, there is this message: Not enough data to perform mass calibration. Using the uncalibrated data.

**FIRST SEARCH DONE IN 267.968 MIN**

**MASS CALIBRATION AND PARAMETER OPTIMIZATION ----- --------------- --------------- --------------- --------------- MS1 (Old) MS1 (New) MS2 (Old) MS2 (New)
Run Median MAD Median MAD Median MAD Median MAD
001 Not enough data to perform mass calibration. Using the uncalibrated data.
002 Not enough data to perform mass calibration. Using the uncalibrated data.
003 Not enough data to perform mass calibration. Using the uncalibrated data.
004 Not enough data to perform mass calibration. Using the uncalibrated data.
005 Not enough data to perform mass calibration. Using the uncalibrated data.
006 Not enough data to perform mass calibration. Using the uncalibrated data.

Is this normal?

Thanks a lot!

Best regards

Debora

anesvi commented 3 years ago

Yes you need to specify Virtual

“Not enough for calibration” means you have very few high scoring PSMs. You need to check your search parameters. Is it TMT10? What instrument? MS2 or MS3 data?

Alexey

Sent from my iPhone

On Dec 13, 2020, at 5:53 PM, Debora211088 notifications@github.com wrote:

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Dear all,

Please, I am a beginner using MSFRagger, and I have some doubts about it.

First, I have some TMT data to analyze. However, there is no reference channel. Should I set the reference channel as being Virtual?

The second question is about a message that appears in the Mass calibration and parameter optimization step. For all runs, there is this message: Not enough data to perform mass calibration. Using the uncalibrated data.

FIRST SEARCH DONE IN 267.968 MIN

**MASS CALIBRATION AND PARAMETER OPTIMIZATION ----- --------------- --------------- --------------- --------------- MS1 (Old) MS1 (New) MS2 (Old) MS2 (New)
Run Median MAD Median MAD Median MAD Median MAD
001 Not enough data to perform mass calibration. Using the uncalibrated data.
002 Not enough data to perform mass calibration. Using the uncalibrated data.
003 Not enough data to perform mass calibration. Using the uncalibrated data.
004 Not enough data to perform mass calibration. Using the uncalibrated data.
005 Not enough data to perform mass calibration. Using the uncalibrated data.
006 Not enough data to perform mass calibration. Using the uncalibrated data.

Is this normal?

Thanks a lot!

Best regards

Debora

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fcyu commented 3 years ago

Hi @Debora211088 ,

We need to see your log (file name starting with log-) before knowing the reason.

Best,

Fengchao

Debora211088 commented 3 years ago

Hi Professor Alexey and Fengchao,

Thanks for the prompt response.

About the questions: Is it TMT10? What instrument? MS2 or MS3 data? Yes, it is TMT10. The data came from a QExactive. It is MS2 data.

Thanks again, below I pasted the message from the log file.

System OS: Windows Server 2016, Architecture: AMD64 Java Info: 1.8.0_251, Java HotSpot(TM) 64-Bit Server VM, Oracle Corporation

Version info: FragPipe version 14.0 MSFragger version 3.1.1 Philosopher version 3.3.11 (build 1601497354)

LCMS files: Experiment/Group: TMT1

264 commands to execute: WorkspaceCleanInit [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck WorkspaceCleanInit [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck WorkspaceCleanInit [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck MsFragger [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search] java -jar -Dfile.encoding=UTF-8 -Xmx70G D:\Grupo_Solange\Debora\MSFRagger\MSFragger-3.1.1\MSFragger-3.1.1.jar D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\fragger.params D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07697_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07698_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07699_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07700_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07701_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07702_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07703_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07704_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07705b_AN_Debora.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07706_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07707_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07708_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07709_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07710_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07711_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07712_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07713_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07714_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07715_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07716_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07717_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07718_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07719_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07720_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07721_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07722_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07723_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07724_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07725_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07726_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07132_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07133_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07134_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07135_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07136_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07137_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07138_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07139_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07140_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07141_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07142_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07143_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07144_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07145_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07146_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07147_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07148_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07149_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07150_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07151_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07152_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07153_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07154_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07155_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07156_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07157_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07158_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07159_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07160_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07161_AN.mzML PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07133_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07139_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07136_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07145_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07708_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07702_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07154_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07148_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07161_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07157_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07152_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07711_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07143_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07140_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07149_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07698_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07717_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07155_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07700_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07723_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07132_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07724_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07138_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07151_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07718_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07144_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07699_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07712_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07156_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07706_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07710_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07716_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07705b_AN_Debora.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07713_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07153_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07707_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07159_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07701_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07722_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07150_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07141_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07704_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07697_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07725_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07134_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07137_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07719_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07146_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07726_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07703_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07720_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07709_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07158_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07160_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07714_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07135_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07142_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07715_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07721_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet: Workspace init [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07147_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07133_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07133_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07139_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07139_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07136_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07136_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07145_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07145_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07708_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07708_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07702_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07702_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07154_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07154_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07148_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07148_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07161_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07161_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07157_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07157_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07152_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07152_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07711_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07711_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07143_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07143_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07140_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07140_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07149_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07149_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07698_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07698_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07717_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07717_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07155_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07155_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07700_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07700_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07723_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07723_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07132_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07132_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07724_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07724_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07138_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07138_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07151_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07151_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07718_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07718_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07144_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07144_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07699_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07699_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07712_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07712_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07156_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07156_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07706_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07706_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07710_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07710_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07716_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07716_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07705b_AN_Debora.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07705b_AN_Debora.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07713_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07713_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07153_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07153_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07707_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07707_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07159_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07159_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07701_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07701_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07722_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07722_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07150_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07150_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07141_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07141_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07704_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07704_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07697_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07697_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07725_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07725_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07134_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07134_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07137_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07137_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07719_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07719_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07146_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07146_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07726_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07726_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07703_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07703_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07720_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07720_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07709_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07709_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07158_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07158_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07160_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07160_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07714_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07714_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07135_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07135_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07142_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07142_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07715_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07715_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07721_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07721_AN.pepXML PeptideProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07147_AN.pepXML-temp] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe peptideprophet --decoyprobs --ppm --accmass --nonparam --expectscore --decoy rev --database D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta ..\QEHF3_07147_AN.pepXML PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07133_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07139_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07136_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07145_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07708_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07702_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07154_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07148_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07161_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07157_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07152_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07711_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07143_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07140_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07149_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07698_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07717_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07155_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07700_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07723_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07132_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07724_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07138_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07151_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07718_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07144_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07699_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07712_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07156_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07706_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07710_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07716_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07705b_AN_Debora.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07713_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07153_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07707_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07159_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07701_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07722_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07150_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07141_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07704_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07697_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07725_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07134_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07137_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07719_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07146_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07726_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07703_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07720_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07709_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07158_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07160_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07714_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07135_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07142_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07715_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\fragpipe-QEHF3_07721_AN.pepXML-temp PeptideProphet: Delete temp java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib\fragpipe-14.0.jar com.github.chhh.utils.FileDelete D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\fragpipe-QEHF3_07147_AN.pepXML-temp Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07133_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07133_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07156_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07156_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07721_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07721_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07140_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07140_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07136_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07136_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07146_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07146_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07150_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07150_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07698_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07698_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07716_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07716_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07717_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07717_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07726_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07726_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07707_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07707_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07703_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07703_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07153_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07153_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07143_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07143_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07151_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07151_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07148_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07148_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07158_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07158_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07141_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07141_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07138_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07138_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07161_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07161_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07710_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07710_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07700_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07700_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07142_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07142_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07719_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07719_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07139_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07139_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07160_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07160_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07709_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07709_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07159_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07159_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07132_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07132_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07720_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07720_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07701_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07701_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07711_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07711_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07149_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07149_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07715_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07715_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07718_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07718_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07725_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07725_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07705b_AN_Debora.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07705b_AN_Debora.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07708_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07708_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07697_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07697_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07152_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07152_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07702_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07702_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07157_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07157_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07134_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07134_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07712_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07712_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07722_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07722_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07137_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07137_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07147_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07147_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07699_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07699_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07713_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07713_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07723_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07723_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07154_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07154_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07706_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07706_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07144_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07144_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07714_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07714_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07704_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07704_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07724_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07724_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07145_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07145_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07135_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07135_AN.mzML Rewrite pepxml [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2] java -cp D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\lib/ com.dmtavt.fragpipe.util.RewritePepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07155_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07155_AN.mzML ProteinProphet [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe proteinprophet --maxppmdiff 2000000 --output combined D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07133_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07139_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07136_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07145_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07708_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07154_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07702_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07161_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07148_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07157_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07152_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07711_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07143_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07149_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07140_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07698_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07155_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07717_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07700_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07723_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07132_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07724_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07151_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07138_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07718_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07144_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07712_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07699_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07156_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07706_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07710_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07716_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07713_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07705b_AN_Debora.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07153_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07707_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07159_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07722_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07701_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07150_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07141_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07704_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07697_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07725_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07134_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07137_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07719_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07146_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07726_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07720_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07703_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07709_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07158_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07160_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07714_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07135_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07142_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07715_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\interact-QEHF3_07147_AN.pep.xml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\interact-QEHF3_07721_AN.pep.xml PhilosopherDbAnnotate [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe database --annotate D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_redvalidated.fasta --prefix rev PhilosopherDbAnnotate [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe database --annotate D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_redvalidated.fasta --prefix rev PhilosopherDbAnnotate [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe database --annotate D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_redvalidated.fasta --prefix rev PhilosopherFilter [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe filter --sequential --razor --prot 0.01 --tag rev --pepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2 --protxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\combined.prot.xml PhilosopherFilter [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe filter --sequential --razor --prot 0.01 --tag rev --pepxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1 --protxml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\combined.prot.xml FreeQuant [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe freequant --ptw 0.4 --tol 10 --isolated --dir D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2 FreeQuant [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe freequant --ptw 0.4 --tol 10 --isolated --dir D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1 LabelQuant [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe labelquant --tol 20 --level 2 --plex 11 --annot D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\annotation.txt --brand tmt --dir D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2 LabelQuant [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe labelquant --tol 20 --level 2 --plex 11 --annot D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\annotation.txt --brand tmt --dir D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1 PhilosopherReport [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe report PhilosopherAbacus [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windowsamd64\philosopher.exe abacus --razor --reprint --tag rev --protein TMT2 TMT1 TmtIntegrator [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search] java -Xmx70G -cp "D:\Grupo_Solange\Debora\MSFRagger\FragPipe-14.0\fragpipe\tools\tmt-integrator-2.1.5.jar" TMTIntegrator D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\tmt-integrator-conf.yml D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\psm.tsv D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\psm.tsv WorkspaceClean [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --clean --nocheck


Execution order:

    Cmd: [START], Work dir: [D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search]
    Cmd: [WorkspaceCleanInit], Work dir: [D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search]
    Cmd: [WorkspaceCleanInit], Work dir: [D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1]
    Cmd: [WorkspaceCleanInit], Work dir: [D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2]
    Cmd: [MsFragger], Work dir: [D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search]
    Cmd: [PeptideProphet], Work dir: [D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search]
    Cmd: [ProteinProphet], Work dir: [D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search]
    Cmd: [PhilosopherDbAnnotate], Work dir: [D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search]
    Cmd: [PhilosopherFilter], Work dir: [D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search]
    Cmd: [FreeQuant], Work dir: [D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search]
    Cmd: [LabelQuant], Work dir: [D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search]
    Cmd: [PhilosopherReport], Work dir: [D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search]
    Cmd: [PhilosopherAbacus], Work dir: [D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search]
    Cmd: [TmtIntegrator], Work dir: [D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search]
    Cmd: [WorkspaceClean], Work dir: [D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search]
    Cmd: [WorkspaceClean], Work dir: [D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1]
    Cmd: [WorkspaceClean], Work dir: [D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2]

# FragPipe v14.0ui state cache

Table.editor=C
crystalc.correct_isotope_error=false
crystalc.isotope_number=3
crystalc.max-charge=6
crystalc.precursor_isolation_window=0.7
crystalc.precursor_mass=20
crystalc.run-crystalc=false
database.db-path=D\:\\Grupo_Solange\\Debora\\MSC_BA\\MSfragger\\Proteomic\\R1\\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta
database.decoy-tag=rev_
fragpipe-config.bin-msfragger=D\:\\Grupo_Solange\\Debora\\MSFRagger\\MSFragger-3.1.1\\MSFragger-3.1.1.jar
fragpipe-config.bin-philosopher=D\:\\Grupo_Solange\\Debora\\MSFRagger\\philosopher_v3.3.11_windows_amd64\\philosopher.exe
fragpipe-config.bin-python=C\:\\Users\\Mascot\\AppData\\Local\\Programs\\Python\\Python38\\python.exe
freequant.mz-tol=10
freequant.rt-tol=0.4
freequant.run-freequant=false
ionquant.excludemods=
ionquant.heavy=
ionquant.imtol=0.05
ionquant.ionfdr=0.01
ionquant.label=
ionquant.light=
ionquant.mbr=0
ionquant.mbrimtol=0.05
ionquant.mbrmincorr=0
ionquant.mbrrttol=1
ionquant.mbrtoprun=10
ionquant.medium=
ionquant.minexps=1
ionquant.minfreq=0.5
ionquant.minions=2
ionquant.minisotopes=2
ionquant.mztol=10
ionquant.normalization=1
ionquant.peptidefdr=1
ionquant.proteinfdr=1
ionquant.proteinquant=2
ionquant.requantify=1
ionquant.rttol=0.4
ionquant.run-ionquant=true
ionquant.tp=3
ionquant.writeindex=0
msfragger.Y_type_masses=
msfragger.add_topN_complementary=0
msfragger.allow_multiple_variable_mods_on_residue=false
msfragger.allowed_missed_cleavage=2
msfragger.calibrate_mass=2
msfragger.clip_nTerm_M=true
msfragger.deisotope=1
msfragger.delta_mass_exclude_ranges=(-1.5,3.5)
msfragger.deltamass_allowed_residues=ST
msfragger.diagnostic_fragments=
msfragger.diagnostic_intensity_filter=0
msfragger.digest_max_length=50
msfragger.digest_min_length=7
msfragger.fragment_ion_series=b,y
msfragger.fragment_mass_tolerance=20
msfragger.fragment_mass_units=1
msfragger.intensity_transform=0
msfragger.ion_series_definitions=
msfragger.isotope_error=0/1/2
msfragger.labile_search_mode=off
msfragger.localize_delta_mass=false
msfragger.mass_diff_to_variable_mod=0
msfragger.mass_offsets=0
msfragger.max_fragment_charge=2
msfragger.max_variable_mods_combinations=6000
msfragger.max_variable_mods_per_peptide=5
msfragger.min_fragments_modelling=2
msfragger.min_matched_fragments=4
msfragger.minimum_peaks=15
msfragger.minimum_ratio=0.01
msfragger.misc.fragger.clear-mz-hi=0
msfragger.misc.fragger.clear-mz-lo=0
msfragger.misc.fragger.digest-mass-hi=5000
msfragger.misc.fragger.digest-mass-lo=500
msfragger.misc.fragger.enzyme-dropdown=trypsin
msfragger.misc.fragger.precursor-charge-hi=4
msfragger.misc.fragger.precursor-charge-lo=1
msfragger.misc.fragger.remove-precursor-range-hi=1.5
msfragger.misc.fragger.remove-precursor-range-lo=-1.5
msfragger.misc.slice-db=1
msfragger.num_enzyme_termini=1
msfragger.output_format=pepXML
msfragger.output_max_expect=50
msfragger.output_report_topN=1
msfragger.override_charge=false
msfragger.precursor_mass_lower=-50
msfragger.precursor_mass_mode=selected
msfragger.precursor_mass_units=1
msfragger.precursor_mass_upper=50
msfragger.precursor_true_tolerance=20
msfragger.precursor_true_units=1
msfragger.remove_precursor_peak=0
msfragger.report_alternative_proteins=false
msfragger.restrict_deltamass_to=all
msfragger.run-msfragger=true
msfragger.search_enzyme_butnotafter=P
msfragger.search_enzyme_cutafter=KR
msfragger.search_enzyme_name=trypsin
msfragger.table.fix-mods=0.000000,C-Term Peptide,true,-1; 0.000000,N-Term Peptide,true,-1; 0.000000,C-Term Protein,true,-1; 0.000000,N-Term Protein,true,-1; 0.000000,G (glycine),true,-1; 0.000000,A (alanine),true,-1; 0.000000,S (serine),true,-1; 0.000000,P (proline),true,-1; 0.000000,V (valine),true,-1; 0.000000,T (threonine),true,-1; 0.000000,C (cysteine),true,-1; 0.000000,L (leucine),true,-1; 0.000000,I (isoleucine),true,-1; 0.000000,N (asparagine),true,-1; 0.000000,D (aspartic acid),true,-1; 0.000000,Q (glutamine),true,-1; 0.000000,K (lysine),true,-1; 0.000000,E (glutamic acid),true,-1; 0.000000,M (methionine),true,-1; 0.000000,H (histidine),true,-1; 0.000000,F (phenylalanine),true,-1; 0.000000,R (arginine),true,-1; 0.000000,Y (tyrosine),true,-1; 0.000000,W (tryptophan),true,-1; 0.000000,B ,true,-1; 0.000000,J,true,-1; 0.000000,O,true,-1; 0.000000,U,true,-1; 0.000000,X,true,-1; 0.000000,Z,true,-1
msfragger.table.var-mods=15.994900,M,true,1; 57.021464,C,true,5; 125.047700,C,true,5; -17.026500,nQnC,false,1; -18.010600,nE,false,1; 0.000000,site_06,false,1; 0.000000,site_07,false,1; 0.000000,site_08,false,1; 0.000000,site_09,false,1; 0.000000,site_10,false,1; 0.000000,site_11,false,1; 0.000000,site_12,false,1; 0.000000,site_13,false,1; 0.000000,site_14,false,1; 0.000000,site_15,false,1; 0.000000,site_16,false,1
msfragger.track_zero_topN=0
msfragger.use_topN_peaks=150
msfragger.write_calibrated_mgf=false
msfragger.zero_bin_accept_expect=0
msfragger.zero_bin_mult_expect=1
peptide-prophet.cmd-opts=--decoyprobs --ppm --accmass --nonparam --expectscore
peptide-prophet.combine-pepxml=false
peptide-prophet.run-peptide-prophet=true
phi-report.dont-use-prot-proph-file=false
phi-report.filter=--sequential --razor --prot 0.01
phi-report.pep-level-summary=false
phi-report.print-decoys=false
phi-report.run-report=true
phi-report.write-mzid=false
protein-prophet.cmd-opts=--maxppmdiff 2000000
protein-prophet.run-protein-prophet=true
ptmprophet.cmdline=--keepold --static --em 1 --nions b --mods STY\:79.966331,M\:15.9949 --minprob 0.5
ptmprophet.run-ptmprophet=false
ptmshepherd.annotation-common=true
ptmshepherd.annotation-custom=false
ptmshepherd.annotation-unimod=false
ptmshepherd.annotation_file=
ptmshepherd.annotation_tol=0.01
ptmshepherd.cap_y_ions=
ptmshepherd.diag_ions=
ptmshepherd.glyco_mode=false
ptmshepherd.histo_smoothbins=2
ptmshepherd.iontype_a=false
ptmshepherd.iontype_b=true
ptmshepherd.iontype_c=false
ptmshepherd.iontype_x=false
ptmshepherd.iontype_y=true
ptmshepherd.iontype_z=false
ptmshepherd.localization_background=4
ptmshepherd.output_extended=false
ptmshepherd.peakpicking_mass_units=0
ptmshepherd.peakpicking_promRatio=0.3
ptmshepherd.peakpicking_width=0.002
ptmshepherd.precursor_mass_units=0
ptmshepherd.precursor_tol=0.01
ptmshepherd.remainder_masses=
ptmshepherd.run-shepherd=false
ptmshepherd.spectra_maxfragcharge=2
ptmshepherd.varmod_masses=Failed_Carbamidomethylation\:-57.021464
quantitation.run-label-free-quant=false
speclibgen.easypqp.extras.rt_lowess_fraction=0.01
speclibgen.easypqp.rt-cal=noiRT
speclibgen.easypqp.select-file.text=
speclibgen.run-speclibgen=false
speclibgen.use-easypqp=false
speclibgen.use-spectrast=true
tmtintegrator.add_Ref=-1
tmtintegrator.allow_overlabel=true
tmtintegrator.allow_unlabeled=false
tmtintegrator.best_psm=true
tmtintegrator.channel_num=11
tmtintegrator.dont-run-fq-lq=false
tmtintegrator.freequant=--ptw 0.4 --tol 10 --isolated
tmtintegrator.groupby=-1
tmtintegrator.labelquant=--tol 20 --level 2
tmtintegrator.max_pep_prob_thres=0
tmtintegrator.min_ntt=0
tmtintegrator.min_pep_prob=0.9
tmtintegrator.min_percent=0.05
tmtintegrator.min_purity=0.5
tmtintegrator.min_site_prob=-1
tmtintegrator.mod_tag=none
tmtintegrator.ms1_int=true
tmtintegrator.outlier_removal=true
tmtintegrator.print_RefInt=false
tmtintegrator.prot_exclude=none
tmtintegrator.prot_norm=-1
tmtintegrator.psm_norm=false
tmtintegrator.ref_tag=
tmtintegrator.run-tmtintegrator=true
tmtintegrator.top3_pep=true
tmtintegrator.unique_gene=0
tmtintegrator.unique_pep=false
workdir=D\:\\Grupo_Solange\\Debora\\Tese\\MSFragger\\Teste_closed_search
workflow.input.data-type.im-ms=false
workflow.input.data-type.regular-ms=true
workflow.process-exps-separately=false
workflow.ram=70
workflow.threads=70

WorkspaceCleanInit [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[09:44:27] Executing Workspace v3.3.11
INFO[09:44:27] Removing workspace
WARN[09:44:27] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[09:44:27] Done
Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck INFO[09:44:27] Executing Workspace v3.3.11
INFO[09:44:27] Creating workspace
INFO[09:44:27] Done
Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[09:44:27] Executing Workspace v3.3.11
INFO[09:44:27] Removing workspace
WARN[09:44:27] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[09:44:27] Done
Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck INFO[09:44:28] Executing Workspace v3.3.11
INFO[09:44:28] Creating workspace
INFO[09:44:28] Done
Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[09:44:28] Executing Workspace v3.3.11
INFO[09:44:28] Removing workspace
WARN[09:44:28] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[09:44:28] Done
Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2] D:\Grupo_Solange\Debora\MSFRagger\philosopher_v3.3.11_windows_amd64\philosopher.exe workspace --init --nocheck INFO[09:44:28] Executing Workspace v3.3.11
INFO[09:44:28] Creating workspace
INFO[09:44:28] Done
Process 'WorkspaceCleanInit' finished, exit code: 0 MsFragger [Work dir: D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search] java -jar -Dfile.encoding=UTF-8 -Xmx70G D:\Grupo_Solange\Debora\MSFRagger\MSFragger-3.1.1\MSFragger-3.1.1.jar D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\fragger.params D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07697_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07698_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07699_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07700_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07701_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07702_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07703_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07704_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07705b_AN_Debora.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07706_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07707_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07708_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07709_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07710_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07711_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07712_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07713_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07714_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07715_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07716_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07717_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07718_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07719_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07720_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07721_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07722_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07723_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07724_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07725_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07726_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07132_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07133_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07134_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07135_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07136_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07137_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07138_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07139_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07140_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07141_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07142_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07143_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07144_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07145_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07146_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07147_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07148_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07149_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07150_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07151_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07152_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07153_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07154_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07155_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07156_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07157_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07158_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07159_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07160_AN.mzML D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07161_AN.mzML MSFragger version MSFragger-3.1.1 Batmass-IO version 1.19.5 timsdata library version timsdata-2-7-0 (c) University of Michigan RawFileReader reading tool. Copyright (c) 2016 by Thermo Fisher Scientific, Inc. All rights reserved. System OS: Windows Server 2016, Architecture: AMD64 Java Info: 1.8.0_251, Java HotSpot(TM) 64-Bit Server VM, Oracle Corporation JVM started with 62 GB memory Checking database... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07697_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07698_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07699_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07700_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07701_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07702_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07703_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07704_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07705b_AN_Debora.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07706_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07707_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07708_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07709_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07710_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07711_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07712_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07713_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07714_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07715_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07716_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07717_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07718_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07719_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07720_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07721_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07722_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07723_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07724_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07725_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT1\QEHF3_07726_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07132_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07133_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07134_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07135_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07136_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07137_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07138_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07139_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07140_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07141_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07142_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07143_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07144_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07145_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07146_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07147_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07148_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07149_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07150_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07151_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07152_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07153_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07154_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07155_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07156_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07157_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07158_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07159_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07160_AN.mzML... Checking D:\Grupo_Solange\Debora\Tese\MSFragger\Teste_closed_search\TMT2\QEHF3_07161_AN.mzML... Checking if the data is low resolution MS/MS... ***FIRST SEARCH**** Parameters: num_threads = 70 database_name = D:\Grupo_Solange\Debora\MSC_BA\MSfragger\Proteomic\R1\2020-10-02-decoys-contam-Merged_P_serpentes_uniprot_T_BJ_Serpentes_Toxiclassifier_no_red_validated.fasta decoyprefix = rev precursor_mass_lower = -20.0 precursor_mass_upper = 20.0 precursor_mass_units = 1 precursor_true_tolerance = 20.0 precursor_true_units = 1 fragment_mass_tolerance = 20.0 fragment_mass_units = 1 calibrate_mass = 2 write_calibrated_mgf = false isotope_error = 0/1 mass_offsets = 0 labile_search_mode = OFF restrict_deltamass_to = all precursor_mass_mode = SELECTED localize_delta_mass = false delta_mass_exclude_ranges = (-1.5,3.5) fragment_ion_series = b,y ion_series_definitions = search_enzyme_name = trypsin search_enzyme_cutafter = KR search_enzyme_butnotafter = P num_enzyme_termini = 2 allowed_missed_cleavage = 2 clip_nTerm_M = true allow_multiple_variable_mods_on_residue = false max_variable_mods_per_peptide = 3 max_variable_mods_combinations = 5000 output_file_extension = pepXML output_format = pepXML output_report_topN = 1 output_max_expect = 50.0 report_alternative_proteins = false override_charge = false precursor_charge_low = 1 precursor_charge_high = 4 digest_min_length = 7 digest_max_length = 50 digest_mass_range_low = 500.0 digest_mass_range_high = 5000.0 max_fragment_charge = 2 deisotope = 1 track_zero_topN = 0 zero_bin_accept_expect = 0.0 zero_bin_mult_expect = 1.0 add_topN_complementary = 0 minimum_peaks = 15 use_topN_peaks = 150 minIonsScoring = 2 min_matched_fragments = 4 minimum_ratio = 0.01 intensity_transform = 0 remove_precursor_peak = 0 remove_precursor_range = -1.500000,1.500000 clear_mz_range_low = 0.0 clear_mz_range_high = 0.0 excluded_scan_list_file = mass_diff_to_variable_mod = 0 variable_mod_01 = 15.994900 M 1 add_A_alanine = 0.000000 add_B_user_amino_acid = 0.000000 add_C_cysteine = 0.000000 add_Cterm_peptide = 0.0 add_Cterm_protein = 0.0 add_D_aspartic_acid = 0.000000 add_E_glutamic_acid = 0.000000 add_F_phenylalanine = 0.000000 add_G_glycine = 0.000000 add_H_histidine = 0.000000 add_I_isoleucine = 0.000000 add_J_user_amino_acid = 0.000000 add_K_lysine = 0.000000 add_L_leucine = 0.000000 add_M_methionine = 0.000000 add_N_asparagine = 0.000000 add_Nterm_peptide = 0.0 add_Nterm_protein = 0.0 add_O_user_amino_acid = 0.000000 # O = pyrrolysine (255.15829 Da) add_P_proline = 0.000000 add_Q_glutamine = 0.000000 add_R_arginine = 0.000000 add_S_serine = 0.000000 add_T_threonine = 0.000000 add_U_user_amino_acid = 0.000000 # U = selenocysteine (150.95363 Da) add_V_valine = 0.000000 add_W_tryptophan = 0.000000 add_X_user_amino_acid = 0.000000 add_Y_tyrosine = 0.000000 add_Z_user_amino_acid = 0.000000 Selected fragment index width 0.10 Da. 444213000 fragments to be searched in 1 slices (6.62 GB total) Operating on slice 1 of 1: Fragment index slice generated in 1.41 s

  1. QEHF3_07697_AN.mzML 177.0 s | deisotoping 0.1 s [progress: 29197/29197 (100%) - 6828 spectra/s] 4.3s | postprocessing 0.1 s
  2. QEHF3_07698_AN.mzML 323.4 s | deisotoping 0.1 s [progress: 29231/29231 (100%) - 62998 spectra/s] 0.5s | postprocessing 0.1 s
  3. QEHF3_07699_AN.mzML 262.2 s | deisotoping 0.1 s [progress: 29479/29479 (100%) - 62061 spectra/s] 0.5s | postprocessing 0.1 s
  4. QEHF3_07700_AN.mzML 210.1 s | deisotoping 0.1 s [progress: 28361/28361 (100%) - 68505 spectra/s] 0.4s | postprocessing 0.1 s
  5. QEHF3_07701_AN.mzML 152.4 s | deisotoping 0.1 s [progress: 28248/28248 (100%) - 8610 spectra/s] 3.3s | postprocessing 0.1 s
  6. QEHF3_07702_AN.mzML 347.2 s | deisotoping 0.1 s [progress: 28026/28026 (100%) - 72232 spectra/s] 0.4s | postprocessing 0.1 s
  7. QEHF3_07703_AN.mzML 297.4 s | deisotoping 0.1 s [progress: 27815/27815 (100%) - 66703 spectra/s] 0.4s | postprocessing 0.1 s
  8. QEHF3_07704_AN.mzML 238.3 s | deisotoping 0.1 s [progress: 28143/28143 (100%) - 69147 spectra/s] 0.4s | postprocessing 0.1 s
  9. QEHF3_07705b_AN_Debora.mzML 180.3 s | deisotoping 0.5 s [progress: 28669/28669 (100%) - 48022 spectra/s] 0.6s | postprocessing 0.1 s
  10. QEHF3_07706_AN.mzML 333.4 s | deisotoping 0.1 s [progress: 28065/28065 (100%) - 71594 spectra/s] 0.4s | postprocessing 0.1 s
  11. QEHF3_07707_AN.mzML 278.0 s | deisotoping 0.1 s [progress: 27291/27291 (100%) - 68917 spectra/s] 0.4s | postprocessing 0.1 s
  12. QEHF3_07708_AN.mzML 227.2 s | deisotoping 0.1 s [progress: 25085/25085 (100%) - 87404 spectra/s] 0.3s | postprocessing 0.1 s
  13. QEHF3_07709_AN.mzML 179.6 s | deisotoping 0.1 s [progress: 28395/28395 (100%) - 48209 spectra/s] 0.6s | postprocessing 0.1 s
  14. QEHF3_07710_AN.mzML 329.6 s | deisotoping 0.1 s [progress: 28413/28413 (100%) - 71211 spectra/s] 0.4s | postprocessing 0.1 s
  15. QEHF3_07711_AN.mzML 276.5 s | deisotoping 0.1 s [progress: 29429/29429 (100%) - 71778 spectra/s] 0.4s | postprocessing 0.1 s
  16. QEHF3_07712_AN.mzML 221.1 s | deisotoping 0.1 s [progress: 29134/29134 (100%) - 75282 spectra/s] 0.4s | postprocessing 0.1 s
  17. QEHF3_07713_AN.mzML 168.4 s | deisotoping 0.1 s [progress: 28513/28513 (100%) - 47522 spectra/s] 0.6s | postprocessing 0.1 s
  18. QEHF3_07714_AN.mzML 329.2 s | deisotoping 0.1 s [progress: 29307/29307 (100%) - 75534 spectra/s] 0.4s | postprocessing 0.1 s
  19. QEHF3_07715_AN.mzML 272.2 s | deisotoping 0.1 s [progress: 28679/28679 (100%) - 77302 spectra/s] 0.4s | postprocessing 0.1 s
  20. QEHF3_07716_AN.mzML 239.6 s | deisotoping 0.1 s [progress: 29845/29845 (100%) - 71571 spectra/s] 0.4s | postprocessing 0.1 s
  21. QEHF3_07717_AN.mzML 186.5 s | deisotoping 0.2 s [progress: 29868/29868 (100%) - 48019 spectra/s] 0.6s | postprocessing 0.1 s
  22. QEHF3_07718_AN.mzML 315.8 s | deisotoping 0.1 s [progress: 30004/30004 (100%) - 67123 spectra/s] 0.4s | postprocessing 0.1 s
  23. QEHF3_07719_AN.mzML 253.0 s | deisotoping 0.1 s [progress: 28927/28927 (100%) - 67745 spectra/s] 0.4s | postprocessing 0.1 s
  24. QEHF3_07720_AN.mzML 180.4 s | deisotoping 0.1 s [progress: 28902/28902 (100%) - 51336 spectra/s] 0.6s | postprocessing 0.1 s
  25. QEHF3_07721_AN.mzML 334.2 s | deisotoping 0.2 s [progress: 27797/27797 (100%) - 24643 spectra/s] 1.1s | postprocessing 0.1 s
  26. QEHF3_07722_AN.mzML 266.5 s | deisotoping 0.2 s [progress: 27093/27093 (100%) - 82853 spectra/s] 0.3s | postprocessing 0.0 s
  27. QEHF3_07723_AN.mzML 217.2 s | deisotoping 0.2 s [progress: 27222/27222 (100%) - 64355 spectra/s] 0.4s | postprocessing 0.1 s
  28. QEHF3_07724_AN.mzML 159.7 s | deisotoping 0.2 s [progress: 28754/28754 (100%) - 62509 spectra/s] 0.5s | postprocessing 0.1 s
  29. QEHF3_07725_AN.mzML 175.4 s | deisotoping 0.0 s [progress: 16205/16205 (100%) - 162050 spectra/s] 0.1s | postprocessing 0.0 s
  30. QEHF3_07726_AN.mzML 50.6 s | deisotoping 0.2 s [progress: 28320/28320 (100%) - 64218 spectra/s] 0.4s | postprocessing 0.1 s
  31. QEHF3_07132_AN.mzML 51.3 s | deisotoping 0.1 s [progress: 28934/28934 (100%) - 73066 spectra/s] 0.4s | postprocessing 0.1 s
  32. QEHF3_07133_AN.mzML 50.8 s | deisotoping 0.1 s [progress: 28799/28799 (100%) - 47918 spectra/s] 0.6s | postprocessing 0.1 s
  33. QEHF3_07134_AN.mzML 51.0 s | deisotoping 0.1 s [progress: 28581/28581 (100%) - 67888 spectra/s] 0.4s | postprocessing 0.1 s
  34. QEHF3_07135_AN.mzML 51.2 s | deisotoping 0.1 s [progress: 27487/27487 (100%) - 69063 spectra/s] 0.4s | postprocessing 0.1 s
  35. QEHF3_07136_AN.mzML 50.9 s | deisotoping 0.1 s [progress: 27513/27513 (100%) - 70910 spectra/s] 0.4s | postprocessing 0.1 s
  36. QEHF3_07137_AN.mzML 50.8 s | deisotoping 0.1 s [progress: 26736/26736 (100%) - 38748 spectra/s] 0.7s | postprocessing 0.1 s
  37. QEHF3_07138_AN.mzML 50.7 s | deisotoping 0.1 s [progress: 26552/26552 (100%) - 67562 spectra/s] 0.4s | postprocessing 0.1 s
  38. QEHF3_07139_AN.mzML 51.0 s | deisotoping 0.1 s [progress: 27043/27043 (100%) - 67777 spectra/s] 0.4s | postprocessing 0.1 s
  39. QEHF3_07140_AN.mzML 50.8 s | deisotoping 0.1 s [progress: 26756/26756 (100%) - 65901 spectra/s] 0.4s | postprocessing 0.1 s
  40. QEHF3_07141_AN.mzML 179.1 s | deisotoping 0.1 s [progress: 26315/26315 (100%) - 66620 spectra/s] 0.4s | postprocessing 0.1 s
  41. QEHF3_07142_AN.mzML 147.6 s | deisotoping 0.1 s [progress: 26083/26083 (100%) - 41011 spectra/s] 0.6s | postprocessing 0.1 s
  42. QEHF3_07143_AN.mzML 315.3 s | deisotoping 0.1 s [progress: 23883/23883 (100%) - 70451 spectra/s] 0.3s | postprocessing 0.1 s
  43. QEHF3_07144_AN.mzML 283.6 s | deisotoping 0.1 s [progress: 25323/25323 (100%) - 69378 spectra/s] 0.4s | postprocessing 0.1 s
  44. QEHF3_07145_AN.mzML 243.7 s | deisotoping 0.1 s [progress: 27062/27062 (100%) - 71593 spectra/s] 0.4s | postprocessing 0.1 s
  45. QEHF3_07146_AN.mzML 201.5 s | deisotoping 0.1 s [progress: 27417/27417 (100%) - 70662 spectra/s] 0.4s | postprocessing 0.1 s
  46. QEHF3_07147_AN.mzML 157.6 s | deisotoping 0.1 s [progress: 27342/27342 (100%) - 37558 spectra/s] 0.7s | postprocessing 0.1 s
  47. QEHF3_07148_AN.mzML 330.9 s | deisotoping 0.1 s [progress: 27033/27033 (100%) - 71327 spectra/s] 0.4s | postprocessing 0.1 s
  48. QEHF3_07149_AN.mzML 290.2 s | deisotoping 0.1 s [progress: 27445/27445 (100%) - 70917 spectra/s] 0.4s | postprocessing 0.1 s
  49. QEHF3_07150_AN.mzML 249.0 s | deisotoping 0.0 s [progress: 27706/27706 (100%) - 77608 spectra/s] 0.4s | postprocessing 0.1 s
  50. QEHF3_07151_AN.mzML 205.1 s | deisotoping 0.1 s [progress: 29032/29032 (100%) - 70126 spectra/s] 0.4s | postprocessing 0.1 s
  51. QEHF3_07152_AN.mzML 155.3 s | deisotoping 0.1 s [progress: 30308/30308 (100%) - 36428 spectra/s] 0.8s | postprocessing 0.1 s
  52. QEHF3_07153_AN.mzML 329.8 s | deisotoping 0.1 s [progress: 30511/30511 (100%) - 76661 spectra/s] 0.4s | postprocessing 0.1 s
  53. QEHF3_07154_AN.mzML 275.5 s | deisotoping 0.1 s [progress: 30102/30102 (100%) - 71842 spectra/s] 0.4s | postprocessing 0.1 s
  54. QEHF3_07155_AN.mzML 221.2 s | deisotoping 0.1 s [progress: 29919/29919 (100%) - 78734 spectra/s] 0.4s | postprocessing 0.1 s
  55. QEHF3_07156_AN.mzML 164.7 s | deisotoping 0.1 s [progress: 29014/29014 (100%) - 33895 spectra/s] 0.9s | postprocessing 0.1 s
  56. QEHF3_07157_AN.mzML 340.7 s | deisotoping 0.1 s [progress: 29547/29547 (100%) - 70518 spectra/s] 0.4s | postprocessing 0.1 s
  57. QEHF3_07158_AN.mzML 282.4 s | deisotoping 0.1 s [progress: 29039/29039 (100%) - 76418 spectra/s] 0.4s | postprocessing 0.1 s
  58. QEHF3_07159_AN.mzML 229.8 s | deisotoping 0.1 s [progress: 30170/30170 (100%) - 69356 spectra/s] 0.4s | postprocessing 0.1 s
  59. QEHF3_07160_AN.mzML 173.7 s | deisotoping 0.1 s [progress: 29722/29722 (100%) - 64194 spectra/s] 0.5s | postprocessing 0.1 s
  60. QEHF3_07161_AN.mzML 111.3 s | deisotoping 0.1 s [progress: 29361/29361 (100%) - 72318 spectra/s] 0.4s | postprocessing 0.1 s ***FIRST SEARCH DONE IN 267.968 MIN**
**MASS CALIBRATION AND PARAMETER OPTIMIZATION ----- --------------- --------------- --------------- --------------- MS1 (Old) MS1 (New) MS2 (Old) MS2 (New)
Run Median MAD Median MAD Median MAD Median MAD
001 Not enough data to perform mass calibration. Using the uncalibrated data.
002 Not enough data to perform mass calibration. Using the uncalibrated data.
003 Not enough data to perform mass calibration. Using the uncalibrated data.
004 Not enough data to perform mass calibration. Using the uncalibrated data.
005 Not enough data to perform mass calibration. Using the uncalibrated data.
006 Not enough data to perform mass calibration. Using the uncalibrated data.
007 Not enough data to perform mass calibration. Using the uncalibrated data.
008 Not enough data to perform mass calibration. Using the uncalibrated data.
009 Not enough data to perform mass calibration. Using the uncalibrated data.
010 Not enough data to perform mass calibration. Using the uncalibrated data.
011 Not enough data to perform mass calibration. Using the uncalibrated data.
012 Not enough data to perform mass calibration. Using the uncalibrated data.
013 Not enough data to perform mass calibration. Using the uncalibrated data.
014 Not enough data to perform mass calibration. Using the uncalibrated data.
015 Not enough data to perform mass calibration. Using the uncalibrated data.
016 Not enough data to perform mass calibration. Using the uncalibrated data.
017 Not enough data to perform mass calibration. Using the uncalibrated data.
018 Not enough data to perform mass calibration. Using the uncalibrated data.
019 Not enough data to perform mass calibration. Using the uncalibrated data.
020 Not enough data to perform mass calibration. Using the uncalibrated data.
021 Not enough data to perform mass calibration. Using the uncalibrated data.
022 Not enough data to perform mass calibration. Using the uncalibrated data.
023 Not enough data to perform mass calibration. Using the uncalibrated data.
024 Not enough data to perform mass calibration. Using the uncalibrated data.
025 Not enough data to perform mass calibration. Using the uncalibrated data.
026 Not enough data to perform mass calibration. Using the uncalibrated data.
027 Not enough data to perform mass calibration. Using the uncalibrated data.
028 Not enough data to perform mass calibration. Using the uncalibrated data.
029 Not enough data to perform mass calibration. Using the uncalibrated data.
030 Not enough data to perform mass calibration. Using the uncalibrated data.
031 Not enough data to perform mass calibration. Using the uncalibrated data.
032 Not enough data to perform mass calibration. Using the uncalibrated data.
033 Not enough data to perform mass calibration. Using the uncalibrated data.
034 Not enough data to perform mass calibration. Using the uncalibrated data.
035 Not enough data to perform mass calibration. Using the uncalibrated data.
036 Not enough data to perform mass calibration. Using the uncalibrated data.
037 Not enough data to perform mass calibration. Using the uncalibrated data.
038 Not enough data to perform mass calibration. Using the uncalibrated data.
039 Not enough data to perform mass calibration. Using the uncalibrated data.
040 Not enough data to perform mass calibration. Using the uncalibrated data.
041 Not enough data to perform mass calibration. Using the uncalibrated data.
042 Not enough data to perform mass calibration. Using the uncalibrated data.
043 Not enough data to perform mass calibration. Using the uncalibrated data.
044 Not enough data to perform mass calibration. Using the uncalibrated data.
045 Not enough data to perform mass calibration. Using the uncalibrated data.
046 Not enough data to perform mass calibration. Using the uncalibrated data.
047 Not enough data to perform mass calibration. Using the uncalibrated data.
048 Not enough data to perform mass calibration. Using the uncalibrated data.
049 Not enough data to perform mass calibration. Using the uncalibrated data.
050 Not enough data to perform mass calibration. Using the uncalibrated data.
051 Not enough data to perform mass calibration. Using the uncalibrated data.
052 Not enough data to perform mass calibration. Using the uncalibrated data.
053 Not enough data to perform mass calibration. Using the uncalibrated data.
054 Not enough data to perform mass calibration. Using the uncalibrated data.
055 Not enough data to perform mass calibration. Using the uncalibrated data.
056 Not enough data to perform mass calibration. Using the uncalibrated data.
057 Not enough data to perform mass calibration. Using the uncalibrated data.
058 Not enough data to perform mass calibration. Using the uncalibrated data.
059 Not enough data to perform mass calibration. Using the uncalibrated data.
060 Not enough data to perform mass calibration. Using the uncalibrated data.
----- --------------- --------------- --------------- ---------------
Finding the optimal parameters: ------- ------- ------- ------- ------- ------- ------- ------- ------- MS2 5 7 10 15 20 25 30 50
Count 643 523 skip rest
------- ------- ------- ------- ------- ------- ------- ------- -------
------- ------- ------- ------- ------- ------- ------- -------
Peaks 500_0 300_0 200_0 175_0 150_1 125_1 100_1
------- ------- ------- ------- ------- ------- ------- -------

Count

fcyu commented 3 years ago

Hi @Debora211088 ,

Both of your variable modification and fixed modification settings don't look right. You need to set TMT modifications. I suggest you loading TMT workflow and, then, making minor changes according to your data.

Best,

Fengchao

sarah-haynes commented 3 years ago

Hi Debora, have you seen the main FragPipe tutorial? Hopefully it will be helpful.

Sarah

Debora211088 commented 3 years ago

Hi Fengchao,

Thank you! I will follow your instructions!

Best regards,

Debora

Debora211088 commented 3 years ago

Hi Sarah,

Oh, thank you! I did not see it! I will check it

Thanks again

Best regards

Debora

prvst commented 3 years ago

Oi @Debora211088

Se você precisar de ajuda com alguma de nossas ferramentas ou tiver dúvidas em como configurá-las, por favor sinta-se a vontade de entrar em contato diretamente comigo. Posso lhe passar meu e-mail se quiser.

Felipe

Debora211088 commented 3 years ago

Oi Felipe, @prvst

Muito obrigada! Por favor, se não for te atrapalhar eu gostaria sim.

Depois das orientações eu progredi um pouco, mas ainda tenho algumas dúvidas.

Posso escrever para o e-mail que consta no seu perfil do Github?

Muito obrigada novamente

Debora

prvst commented 3 years ago

Pode sim, fique a vontade.