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Nesvilab / PD-Nodes

The implementation of MSFragger and Philosopher (PeptideProphet) as Proteome Discoverer nodes
http://www.nesvilab.org/PD-Nodes/
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source code for the node #12

Closed animesh closed 3 years ago

animesh commented 4 years ago

I am wondering if the source code is available for the node? I would like to try to add the PTMshepherd to the same, if possible?

huiyinc commented 4 years ago

Hi~

I am sorry but the source code is currently unavailable. Also, I think implementing PTMshepherd as a node in PD is different from the implementation of MSFragger to PD.For example, the input files are different. MSFragger accepts raw/mzML files as the input, but PTMshepherd requires PSM tables generated by Philosopher (as I remember). Another thing to be considered is: what the node type should PTMshepherd be implemented, processing or consensus node? Different node types provide different levels of data information. There are more details need to be considered which might take time to add PTMshepherd to PD. So, I would suggest to use FragPipe if you want to run PTMshepherd.

Thanks.

Huiyin

Ani notifications@github.com 於 2020年8月20日 下午6:30 寫道：



I am wondering if the source code is available for the node? I would like to try to add the PTMshepherd to the same, if possible?

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