anesvi
commented
3 years ago Dear J. Lenco,
deisotoping, mass calibration, and parameter optimization – these are part of MSFragger. I think they are already available in the current PD node. If not, they will be when we update the node.
However, other tools such as PTM-Shepherd, we do not see a simple way to add them to PD. We will keep your suggestion in mind, but need to see what it involves.
Best Alexey
From: JurajLenco notifications@github.com Sent: Sunday, February 7, 2021 5:09 PM To: Nesvilab/PD-Nodes PD-Nodes@noreply.github.com Cc: Subscribed subscribed@noreply.github.com Subject: [Nesvilab/PD-Nodes] New functionalities (#17)
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Hi, I like to use MSFragger via the PD node. For me, It is currently the most straightforward way to visualize the MSFragger results. Do you plan to implement also the new functionalities that are available in the current version of FragPipe to the nodes, such as PTM-Shaperd, deisotoping, mass calibration, and parameter optimization? Thanks, J. Lenco
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JurajLenco
Hi, I like to use MSFragger via the PD node. For me, It is currently the most straightforward way to visualize the MSFragger results. Do you plan to implement also the new functionalities that are available in the current version of FragPipe to the nodes, such as PTM-Shaperd, deisotoping, mass calibration, and parameter optimization? Thanks, J. Lenco