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Nesvilab / PD-Nodes

The implementation of MSFragger and Philosopher (PeptideProphet) as Proteome Discoverer nodes
http://www.nesvilab.org/PD-Nodes/
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Request - N-terminal enzymatic digestion #18

Closed TomClarkMassSpec closed 3 years ago

TomClarkMassSpec commented 3 years ago

Hi,

Selecting the 'custom' from enzyme selection list, user is presented with 'cuts after' and 'but not before'. Lysarginase cuts N-terminal to R and K but not after P. Please, thank you and more of a suggested addition., Tom

Tsiatsiani L, Giansanti P, Scheltema RA, van den Toorn H, Overall CM, Altelaar AF, Heck AJ. J Proteome Res. 2017 Feb 3;16(2):852-861. doi: 10.1021/acs.jproteome.6b00825. Epub 2016 Dec 2. PMID: 28111955 Bell PA, Solis N, Kizhakkedathu JN, Matthew I, Overall CM. J Proteome Res. 2019 Dec 6;18(12):4167-4179. doi: 10.1021/acs.jproteome.9b00445. Epub 2019 Oct 25. PMID: 31601107

TomClarkMassSpec commented 3 years ago

Moved to MS Fragger issues