Making sense of the PTM-shephard results

Nesvilab / PTM-Shepherd

A tool for summarizing open search results

http://ptmshepherd.nesvilab.org

Apache License 2.0

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Making sense of the PTM-shephard results #6

Closed Jokendo-collab closed 3 years ago

Jokendo-collab commented 4 years ago

Hi all, I know this may be a spammy question but I am genuinly asking for your help in the interpratation of the PTM shephard result. I have a problem making sense of the output PTM profile text file (see the attached file). Which column should I use in interprating the PTMs in my data? should I use the enrichment column or the mass shift column? Kindly help $SIM_bcg.profile.txt

danielgeiszler commented 3 years ago

For future reference, please see the output file list and descriptions here: https://fragpipe.nesvilab.org/docs/tutorial_fragpipe_outputs.html