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Nesvilab / TMT-Integrator

A tool integrates channel abundances from multiple TMT samples and exports a general report for downstream analysis.
http://tmt-integrator.nesvilab.org
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Some empty column names in output #17

Closed andreabc closed 3 years ago

andreabc commented 3 years ago

Hi, thanks for the great tool! I successfully ran the philosopher pipeline (including TMT integrator) on my dataset, however, 3 column names are missing image

I checked and all sample IDs from my annotation files are present (except the pooled reference IDs), not sure what the extra columns correspond to. Any ideas?

Thanks for your help

huiyinc commented 3 years ago

Hi,

To figure out the issue, can you share your psm, fasta and TMT-Integrator parameter files with me? Thanks.

Huiyin

Andrea @.***> 於 2021年6月3日 上午7:58 寫道：

 Hi, thanks for the great tool! I successfully ran the philosopher pipeline (including TMT integrator) on my dataset, however, 3 column names are missing

I checked and all sample IDs from my annotation files are present (except the pooled reference IDs), not sure what the extra columns correspond to. Any ideas?

Thanks for your help

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andreabc commented 3 years ago

Ah I figured it out, I had some duplicate 'pooled' labels in 3 annotation files, when I rename the extra pooled channels there are no more issues. Thank you!

anesvi commented 3 years ago

This is actually a common problem… Hui-yin, should we check that the table has only one sample matching the reference tag? And if more than one, give an error?

From: Andrea @.> Sent: Friday, June 4, 2021 1:27 PM To: Nesvilab/TMT-Integrator @.> Cc: Subscribed @.***> Subject: Re: [Nesvilab/TMT-Integrator] Some empty column names in output (#17)

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Ah I figured it out, I had some duplicate 'pooled' labels in 3 annotation files, when I rename the extra pooled channels there are no more issues. Thank you!

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huiyinc commented 3 years ago

Hi Alexey,

I have added it in TMT-Integrator. So it will be in our next release. Thanks!

Huiyin

Alexey Nesvizhskii @.***> 於 2021年6月5日 上午1:33 寫道：

 This is actually a common problem… Hui-yin, should we check that the table has only one sample matching the reference tag? And if more than one, give an error?

From: Andrea @.> Sent: Friday, June 4, 2021 1:27 PM To: Nesvilab/TMT-Integrator @.> Cc: Subscribed @.***> Subject: Re: [Nesvilab/TMT-Integrator] Some empty column names in output (#17)

External Email - Use Caution

Ah I figured it out, I had some duplicate 'pooled' labels in 3 annotation files, when I rename the extra pooled channels there are no more issues. Thank you!

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHubhttps://github.com/Nesvilab/TMT-Integrator/issues/17#issuecomment-854890327, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AIIMM6Z4VEA3OVB7T5JGONLTREEHRANCNFSM457WF2SA.

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