fatal error: all goroutines are asleep - deadlock! & Process 'PhilosopherFilter' finished, exit code: 2

[MelissaVorster]

• Describe the issue or question: Good day, I am running a LFQ workflow using .mzML files and the mouse ref database. I get this error and unfortunately not any of the previous issue's answers seem related. Could you please help?

• Upload your log file log_2023-06-09_14-36-20.txt

[guoci]

@MelissaVorster I have pushed a fix to the code. For an immediate solution, set the number of threads to ≥ 2.

[MelissaVorster]

Hi, thank you very much. When you say "set the number of threads" are you referring to the global settings?

[cid:64d7eaa6-4b78-478a-b117-dba2a4ddef60]

Or where can one find these settings?

Kind Regards/ Vriendelike Groete

Melissa Vorster | MSc (Bioinfo and Comp Bio) Candidate Centre for Bioinformatics and Computational Biology

Faculty of Science | amaMaties.net Council 2023 | Support

e: @.*** | t: +27 81 253 9730

[cid:c15a7b58-ee8f-4bce-8698-302b4c6bf948]

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From: Guo Ci @.> Sent: Monday, June 12, 2023 7:24 PM To: Nesvilab/philosopher @.> Cc: Vorster, MS, Mej @. @.>; Mention @.***> Subject: Re: [Nesvilab/philosopher] fatal error: all goroutines are asleep - deadlock! & Process 'PhilosopherFilter' finished, exit code: 2 (Issue #441)

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@MelissaVorsterhttps://github.com/MelissaVorster I have pushed a fix to the code. For an immediate solution, set the number of threads to ≥ 2.

― Reply to this email directly, view it on GitHubhttps://github.com/Nesvilab/philosopher/issues/441#issuecomment-1587754505, or unsubscribehttps://github.com/notifications/unsubscribe-auth/A2FUG4VYIG63QKH3ZY25MKDXK5GFLANCNFSM6AAAAAAZDMTYZE. You are receiving this because you were mentioned.Message ID: @.***>

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[guoci]

Yes, the global settings.

[guoci]

Just a reminder, the fix #442 isn't merged yet