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NetaZuckerman / covid19

SARS-Cov2 identification pipeline
MIT License
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No CoronaPipeline.yml file #6

Closed tthye1 closed 3 years ago

tthye1 commented 3 years ago

Hello,

I couldn't find the CoronaPipeline.yml file for installation of the pipeline.

Best,

Thorsten

danab9 commented 3 years ago

Hi Thorsten, Your are right. You can now find CoronaPipeline.yml in env directory. Thank you for your comment,

Dana.

tthye1 commented 3 years ago

Dear Dana,

Thanks. The installation was now successful. I have noticed that some paths to the novelMutTable.csv table were set for your computer system e.g in MutTable.py such as “pd.read_csv(“/data/projects/Dana/scripts/covid19/novelMutTable.csv”)”. I had to change this.

Otherwise the pipeline runs perfectly.

Thank you and best wishes,

Thorsten

On Jun 1, 2021, at 13:46, Dana Bar Ilan @.***> wrote:

Hi Thorsten, Your are right. You can not find CoronaPipeline.yml in env directory. Thank you for your comment,

Dana.

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danab9 commented 3 years ago

It is no longer hard coded, Thank you for pointing it out! (:

Dana.