python binding/script - Githubissues

Neural-Systems-at-UIO / QuickNII

https://quicknii.readthedocs.io

MIT License

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python binding/script #25

Closed orena1 closed 1 year ago

orena1 commented 1 year ago

Hi, Assuming I have a transformation of an image.

='ox=78.96794382940516&amp;oy=68.4588833448534&amp;oz=301.3318563811956&amp;ux=323.0130983390201&amp;uy=16.995857320965797&amp;uz=-36.838526340134706&amp;vx=-32.667850337151556&amp;vy=32.55494813946791&amp;vz=-270.67826047541917'

And I want to apply the same transformation to many different images, is there any python code available to do it? Thanks

Tevemadar commented 1 year ago

Those many different images, are they some kind of channels/modalities of a single tissue sample?

Tevemadar commented 1 year ago

Without further details, I can only provide some generic links:

https://github.com/Tevemadar/QuickNII-extras has some small pieces of code, amongst them is a Python implementation of the propagation algorithm - that may or may not be what this question is about
https://www.nitrc.org/plugins/mwiki/index.php/quicknii:MainPage has some description of the internals of QuickNII, with some code snippets included here and there, usually in Python.