search

Neural-Systems-at-UIO / VisuAlign

Online manual: https://visualign.readthedocs.io
MIT License
0 stars 1 forks source link

Atlasmaps that extend to edge of image #9

Closed sharoncy closed 3 years ago

sharoncy commented 4 years ago

If an atlas map falls outside of the section image, the atlas map remains anchored outside (cannot be dragged in). Is there a solution for this? The only solution I can see is to reanchor with QuickNII so that the atlas template is within the image boundaries...

sharoncy commented 4 years ago

There are solutions for this - Gergely will look into it.

sharoncy commented 4 years ago

I discussed this with Gergely. For now users should anchor sections so that the atlas maps fall within the boundaries of the sections (the autocropping feature in Transform makes this more likely, in some cases it may be helpful not to autocrop images). In the long run, Gergely will implement support to solve this, for example by adding a border around sections...

Majpuc commented 4 years ago

Do you have some update here?

Majpuc commented 4 years ago

@Tevemadar Did you implement this?

Tevemadar commented 4 years ago

No, this is not implemented fully. VisuAlign allows manipulating an extra 10% border around images, so data created in the current release will be compatible with the future one, but that border displays only empty space now.

Majpuc commented 4 years ago

The 10% border around the image is satisfactory for now.

Majpuc commented 3 years ago

closed 03.09.2021