Unexisting objects detected at the edge of the image

Neural-Systems-at-UIO / nutil

https://nutil.readthedocs.io/en/latest/

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Unexisting objects detected at the edge of the image #216

Closed Wissewald closed 3 years ago

Wissewald commented 3 years ago

As you can see here, some objects were detected at the edges of the image, which do not exist in the Ilastik-segmented image (see below), and assigned to different brain areas. They appear aligned to the edges but, after zooming in, I noticed that they have slightly different distances to the edge.

segmentation

sharoncy commented 3 years ago

I don't have enough information here to be able to investigate. @Wissewald Would you be able to send an example atlas map, segmentation, XML/JSON and Nut file and point out the objects that do not exist in the segmentation? You can contact me directly at s.c.yates@medisin.uio.no. Thanks! (Sharon Yates)