Closed sanjayankur31 closed 6 months ago
Fedora is testing all our Python packages in preparation for Python 3.12. I'm seeing this one failure with PyNN 0.11.0:
platform linux -- Python 3.12.0b4, pytest-7.3.2, pluggy-1.0.0 ... =================================== FAILURES =================================== _______________________ TestProjection.test_partitioning _______________________ self = <unittests.test_brian.TestProjection testMethod=test_partitioning> def test_partitioning(self): p1 = sim.Population(5, sim.IF_cond_exp()) p2 = sim.Population(7, sim.IF_cond_exp()) a = p1 + p2[1:4] # [0 2 3 4 5][x 1 2 3 x x x] prj = sim.Projection(a, a, MockConnector(), synapse_type=self.syn) presynaptic_indices = np.array([0, 3, 4, 6, 7]) > partitions = prj._partition(presynaptic_indices) test/unittests/test_brian.py:38: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = Projection("assembly56→assembly56"), indices = array([0, 3, 4, 6, 7]) def _partition(self, indices): """ partition indices, in case of Assemblies """ if isinstance(self.pre, common.Assembly): boundaries = np.cumsum([0] + [p.size for p in self.pre.populations]) assert indices.max() < boundaries[-1] > partitions = np.split(indices, np.searchsorted( indices, boundaries[1:-1])) - boundaries[:-1] E ValueError: setting an array element with a sequence. The requested array has an inhomogeneous shape after 1 dimensions. The detected shape was (2,) + inhomogene ous part. ../../BUILDROOT/python-pynn-0.11.0-2.fc39.x86_64/usr/lib/python3.12/site-packages/pyNN/brian2/projections.py:172: ValueError
Could be a numpy or brian2 related thing? Not sure yet. Complete build log attached: pynn-0.11.0-buildlog.txt
I don't know if GH actions support py3.12 yet, but if they do, probably worth enabling py3.11 and 3.12 there too?
fixed in e791f6c9
Fedora is testing all our Python packages in preparation for Python 3.12. I'm seeing this one failure with PyNN 0.11.0:
Could be a numpy or brian2 related thing? Not sure yet. Complete build log attached: pynn-0.11.0-buildlog.txt
I don't know if GH actions support py3.12 yet, but if they do, probably worth enabling py3.11 and 3.12 there too?