Closed apdavison closed 4 months ago
When running a simulation with a composed neuron model with only a neuron component, no synapse components, the brian2 backend gives an error.
Example of cell type:
cell = sim.PointNeuron( sim.AdExp( cm=123.5 * 1e-3, tau_refrac=2.47, v_spike=10, v_reset=-51, v_rest=-96.2, tau_m=3.5283698074395744, # 123.5 / (8.6 * 4.07) i_offset=0.0, a=-14.5, b=500.0 * 1e-3, delta_T=16, tau_w=15, v_thresh=-51, ) )
Error message:
Traceback (most recent call last): File "/Users/adavison/dev/simulation/PyNN/examples/trying_AdEx-v2.py", line 49, in <module> SPN_cell = sim.PointNeuron( ^^^^^^^^^^^^^^^^ File "/Users/adavison/dev/simulation/PyNN/pyNN/brian2/standardmodels/cells.py", line 344, in __init__ self.eqs += brian2.Equations(synaptic_current_equation) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/Users/adavison/dev/simulation/env-202404/lib/python3.11/site-packages/brian2/equations/equations.py", line 620, in __init__ self._equations = parse_string_equations(eqns) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/Users/adavison/dev/simulation/env-202404/lib/python3.11/site-packages/brian2/utils/caching.py", line 107, in cached_func func._cache[cache_key] = func(*args, **kwds) ^^^^^^^^^^^^^^^^^^^ File "/Users/adavison/dev/simulation/env-202404/lib/python3.11/site-packages/brian2/equations/equations.py", line 389, in parse_string_equations raise EquationError( brian2.equations.equations.EquationError: Parsing failed: i_syn = : amp ^ Expected end of text, found 'i' (at char 0), (line:1, col:1)
Thanks to Ilaria Carannante for the bug report.
When running a simulation with a composed neuron model with only a neuron component, no synapse components, the brian2 backend gives an error.
Example of cell type:
Error message:
Thanks to Ilaria Carannante for the bug report.