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Neurita / neuro_docker

A Dockerfile to create a Ubuntu docker for neuroimaging
MIT License
10 stars 5 forks source link

Terminal #1

Closed josepman closed 6 years ago

josepman commented 7 years ago

Hi!

I discover your docker in BraincHack Bilbao (thanks to Asier and Ibai ;) ). I have installed docker and all tools operating, but files and directories I transferred from my local machine (with docker run -it -v : dockerfile/neuro) appear in black in the terminal (Basic, Homebrew, Gras....all of them). Attached is a snapshot show them.

captura de pantalla 2017-03-03 a las 18 10 29

captura de pantalla 2017-03-03 a las 18 20 45

Do you know how can I solve that?

Thank you!! josepman@ucm.es

OSX 10.11.6

alexsavio commented 7 years ago

Hi @josepman,

I have never seen that problem. What Terminal app are you using? Have you tried using another? I don't think it is something caused by the container OS, I am not sure. :/

josepman commented 7 years ago

Hi @alexsavio ,

I don't know what it happened. I just tried with iTerm and this problem was solved.

Another issue to your concern is the possibility to include Octave (or Matlab for personal use) in this container. We have commands from Octave in some scripts that we can't use.

Thank you!

alexsavio commented 7 years ago

Hi, Yes, you could also install octave if you wish. The script is already installing the Matlab compiler runtime MCR to run SPM12. I wanted to keep things small as possible, although the container is quite large still. Octave would add another gigabyte, wouldn't it? :/