[x] update nuisance to do compcor and use priors for segmentation: Discr .795 -> .88
[x] edges instead of full-brains when looking at atlases
Thurs -> Monday (some goals will be done by Thursday):
most deliverables are in group presentation.
Code
[x] add more comments throughout code
[x] test anatomical preprocessing at 1mm, and check whether it is worthwhile from a registration quality/computational perspective anat 1mm specs
[ ] merge in greg's recent changes: tried but greg ripped out the fMRI stuff which overwrote my commits, so this is non-trivial unfortunately. will rotate back at a later time.
[x] pep8-ify
[ ] better bids sweeper implementation
Motion-statistics/QA for functional prep
[x] plotly -> matplotlib motion parameters
[x] motion plots as pngs instead of html for consistency
[x] use FD according to power et. al.
[ ] verify that group motion qa works still
updates to templates/documentation
[x] redo entire schematic to reflect new workflow
[ ] update tutorial
[ ] add documentation for what is happening at each step somewhere (to serve as "pseudo appendix for manuscript")
Results
[x] analyze CPAC results
[ ] finish running FNGS datasets
[ ] analyze FNGS results
Slides
[x] update pseudo code
[ ] update slides with better content for Greg (Tuesday)
[x] make slides good for presenting to group
Manuscript
[x] think of 5 figures/captions we could show that would make an interesting manuscript (see below)
misc:
[ ] email pedro with a link to the docker, a link to a tutorial, and a link to the schematic
ebridge2
commented
7 years ago
by Thurs:
Thurs -> Monday (some goals will be done by Thursday): most deliverables are in group presentation.