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NeuroDataDesign / neurodatadesign.github.io

Homepage for NeuroData Design
https://neurodatadesign.io
MIT License
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Project ideas for NDD 20-21 #4

Closed bdpedigo closed 3 years ago

bdpedigo commented 4 years ago

Please leave comments describing ideas for projects below.

bdpedigo commented 4 years ago

PR AutoGMM/GaussianCluster into Sklearn Possibly as part of the above, implement AGMM/GaussianCluster using GridSearch from sklearn internally

jovo commented 4 years ago

PR ZG(2) into sklearn

bdpedigo commented 4 years ago

Write Python implementation of NBLAST or any other useful computational geometry distances for single neurons, make it easy to use on various data representations (e.g. swc, CATMAID, etc.)

Some python packages for this kinda thing exist so could live in one of those repos https://neurom.readthedocs.io/en/latest/index.html

rmehta004 commented 4 years ago

LF/UF in a nice package.

rmehta004 commented 4 years ago

LF+MORF+Image experiments.

bdpedigo commented 4 years ago

A nice implementation of GMM on unit hypersphere

eigenvivek commented 4 years ago

Deep dive into ABIDE I/II data sets

jovo commented 4 years ago

ABIDE I/II data is getting kinda old, maybe we could use some updated data, eg, NKI Enhanced, HCP, or data from Ted Satterthwaite.

On Mon, Jul 27, 2020 at 11:43 PM Vivek Gopalakrishnan < notifications@github.com> wrote:

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Deep dive into ABIDE I/II data sets

  • jaewon's idea of using MGCx to estimate connectomes from fMRI
  • cluster autism data using USPORF
  • compare to mouse results

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