NeuroDataDesign / pan-synapse-f16s17

Detecting synapses from two-fluorescent microscope images.
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Research best way to perform reduce step in the clustering library #10

Closed bstadt closed 7 years ago

jovo commented 7 years ago

and this one.

On Sun, Jan 8, 2017 at 12:18 PM, Brandon Duderstadt < notifications@github.com> wrote:

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bstadt commented 7 years ago

Will do. I should be in clark by 10 tomorrow, and Ill be there basically all day. Will is back as well, should I bring him with me? He will be working with me during intersession on all of this, so I think it would be beneficial if he came as well.

On Sun, Jan 8, 2017 at 12:26 PM, joshua vogelstein <notifications@github.com

wrote:

and this one.

On Sun, Jan 8, 2017 at 12:18 PM, Brandon Duderstadt < notifications@github.com> wrote:

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-- the glass is all full: half water, half air. neurodata.io, jovo calendar https://calendar.google.com/calendar/embed?src=joshuav% 40gmail.com&ctz=America/New_York starting in 2017, i will be responding to emails approximately weekly, so that i can focus more on the people around me. thank you for your understanding.

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jovo commented 7 years ago

yes, ok, let's do class at 10am tomorrow. get yourself and will on spiralscience.slack.com if you are not already

On Sun, Jan 8, 2017 at 12:30 PM, Brandon Duderstadt < notifications@github.com> wrote:

Will do. I should be in clark by 10 tomorrow, and Ill be there basically all day. Will is back as well, should I bring him with me? He will be working with me during intersession on all of this, so I think it would be beneficial if he came as well.

On Sun, Jan 8, 2017 at 12:26 PM, joshua vogelstein < notifications@github.com

wrote:

and this one.

On Sun, Jan 8, 2017 at 12:18 PM, Brandon Duderstadt < notifications@github.com> wrote:

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/NeuroDataDesign/pan-synapse/issues/10, or mute the thread https://github.com/notifications/unsubscribe-auth/ AACjcqDSGgcetlI1s6ZOcplkWEuFlY8Eks5rQRp2gaJpZM4LdveB .

-- the glass is all full: half water, half air. neurodata.io, jovo calendar https://calendar.google.com/calendar/embed?src=joshuav% 40gmail.com&ctz=America/New_York starting in 2017, i will be responding to emails approximately weekly, so that i can focus more on the people around me. thank you for your understanding.

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-- the glass is all full: half water, half air. neurodata.io, jovo calendar https://calendar.google.com/calendar/embed?src=joshuav%40gmail.com&ctz=America/New_York starting in 2017, i will be responding to emails approximately weekly, so that i can focus more on the people around me. thank you for your understanding.

bstadt commented 7 years ago

Great. See you then.

On Jan 8, 2017 12:33 PM, "joshua vogelstein" notifications@github.com wrote:

yes, ok, let's do class at 10am tomorrow. get yourself and will on spiralscience.slack.com if you are not already

On Sun, Jan 8, 2017 at 12:30 PM, Brandon Duderstadt < notifications@github.com> wrote:

Will do. I should be in clark by 10 tomorrow, and Ill be there basically all day. Will is back as well, should I bring him with me? He will be working with me during intersession on all of this, so I think it would be beneficial if he came as well.

On Sun, Jan 8, 2017 at 12:26 PM, joshua vogelstein < notifications@github.com

wrote:

and this one.

On Sun, Jan 8, 2017 at 12:18 PM, Brandon Duderstadt < notifications@github.com> wrote:

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/NeuroDataDesign/pan-synapse/issues/10, or mute the thread https://github.com/notifications/unsubscribe-auth/ AACjcqDSGgcetlI1s6ZOcplkWEuFlY8Eks5rQRp2gaJpZM4LdveB .

-- the glass is all full: half water, half air. neurodata.io, jovo calendar https://calendar.google.com/calendar/embed?src=joshuav% 40gmail.com&ctz=America/New_York starting in 2017, i will be responding to emails approximately weekly, so that i can focus more on the people around me. thank you for your understanding.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/NeuroDataDesign/pan-synapse/ issues/10#issuecomment- 271165165, or mute the thread https://github.com/notifications/unsubscribe-auth/ AMsFhsYGZ41DSglLl0igPU2hrpkCLpmrks5rQRxHgaJpZM4LdveB .

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-- the glass is all full: half water, half air. neurodata.io, jovo calendar https://calendar.google.com/calendar/embed?src=joshuav% 40gmail.com&ctz=America/New_York starting in 2017, i will be responding to emails approximately weekly, so that i can focus more on the people around me. thank you for your understanding.

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jovo commented 7 years ago

by the way - i recommend not using this clustering approach that you are planning on using. it is new and shiny, but not state of the art afaict.

On Sun, Jan 8, 2017 at 12:34 PM, Brandon Duderstadt < notifications@github.com> wrote:

Great. See you then.

On Jan 8, 2017 12:33 PM, "joshua vogelstein" notifications@github.com

wrote:

yes, ok, let's do class at 10am tomorrow. get yourself and will on spiralscience.slack.com if you are not already

On Sun, Jan 8, 2017 at 12:30 PM, Brandon Duderstadt < notifications@github.com> wrote:

Will do. I should be in clark by 10 tomorrow, and Ill be there basically all day. Will is back as well, should I bring him with me? He will be working with me during intersession on all of this, so I think it would be beneficial if he came as well.

On Sun, Jan 8, 2017 at 12:26 PM, joshua vogelstein < notifications@github.com

wrote:

and this one.

On Sun, Jan 8, 2017 at 12:18 PM, Brandon Duderstadt < notifications@github.com> wrote:

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/NeuroDataDesign/pan-synapse/issues/10, or mute the thread https://github.com/notifications/unsubscribe-auth/ AACjcqDSGgcetlI1s6ZOcplkWEuFlY8Eks5rQRp2gaJpZM4LdveB .

-- the glass is all full: half water, half air. neurodata.io, jovo calendar https://calendar.google.com/calendar/embed?src=joshuav% 40gmail.com&ctz=America/New_York starting in 2017, i will be responding to emails approximately weekly, so that i can focus more on the people around me. thank you for your understanding.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/NeuroDataDesign/pan-synapse/ issues/10#issuecomment- 271165165, or mute the thread https://github.com/notifications/unsubscribe-auth/ AMsFhsYGZ41DSglLl0igPU2hrpkCLpmrks5rQRxHgaJpZM4LdveB .

— You are receiving this because you commented. Reply to this email directly, view it on GitHub https://github.com/NeuroDataDesign/pan-synapse/ issues/10#issuecomment- 271165409, or mute the thread https://github.com/notifications/unsubscribe-auth/ AACjcjFw3R6Px6EJlDaOCMNDh8o0vxKdks5rQR0hgaJpZM4LdveB .

-- the glass is all full: half water, half air. neurodata.io, jovo calendar https://calendar.google.com/calendar/embed?src=joshuav% 40gmail.com&ctz=America/New_York starting in 2017, i will be responding to emails approximately weekly, so that i can focus more on the people around me. thank you for your understanding.

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-- the glass is all full: half water, half air. neurodata.io, jovo calendar https://calendar.google.com/calendar/embed?src=joshuav%40gmail.com&ctz=America/New_York starting in 2017, i will be responding to emails approximately weekly, so that i can focus more on the people around me. thank you for your understanding.

bstadt commented 7 years ago

Ok. I will focus on testing all of the existing PLOS code with will tonight then and we can touch base about where to go from here tomorrow morning.

On Jan 8, 2017 12:36 PM, "joshua vogelstein" notifications@github.com wrote:

by the way - i recommend not using this clustering approach that you are planning on using. it is new and shiny, but not state of the art afaict.

On Sun, Jan 8, 2017 at 12:34 PM, Brandon Duderstadt < notifications@github.com> wrote:

Great. See you then.

On Jan 8, 2017 12:33 PM, "joshua vogelstein" notifications@github.com

wrote:

yes, ok, let's do class at 10am tomorrow. get yourself and will on spiralscience.slack.com if you are not already

On Sun, Jan 8, 2017 at 12:30 PM, Brandon Duderstadt < notifications@github.com> wrote:

Will do. I should be in clark by 10 tomorrow, and Ill be there basically all day. Will is back as well, should I bring him with me? He will be working with me during intersession on all of this, so I think it would be beneficial if he came as well.

On Sun, Jan 8, 2017 at 12:26 PM, joshua vogelstein < notifications@github.com

wrote:

and this one.

On Sun, Jan 8, 2017 at 12:18 PM, Brandon Duderstadt < notifications@github.com> wrote:

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/NeuroDataDesign/pan-synapse/issues/10, or mute the thread https://github.com/notifications/unsubscribe-auth/ AACjcqDSGgcetlI1s6ZOcplkWEuFlY8Eks5rQRp2gaJpZM4LdveB .

-- the glass is all full: half water, half air. neurodata.io, jovo calendar https://calendar.google.com/calendar/embed?src=joshuav% 40gmail.com&ctz=America/New_York starting in 2017, i will be responding to emails approximately weekly, so that i can focus more on the people around me. thank you for your understanding.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/NeuroDataDesign/pan-synapse/ issues/10#issuecomment- 271165165, or mute the thread https://github.com/notifications/unsubscribe-auth/ AMsFhsYGZ41DSglLl0igPU2hrpkCLpmrks5rQRxHgaJpZM4LdveB .

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-- the glass is all full: half water, half air. neurodata.io, jovo calendar https://calendar.google.com/calendar/embed?src=joshuav% 40gmail.com&ctz=America/New_York starting in 2017, i will be responding to emails approximately weekly, so that i can focus more on the people around me. thank you for your understanding.

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-- the glass is all full: half water, half air. neurodata.io, jovo calendar https://calendar.google.com/calendar/embed?src=joshuav% 40gmail.com&ctz=America/New_York starting in 2017, i will be responding to emails approximately weekly, so that i can focus more on the people around me. thank you for your understanding.

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jovo commented 7 years ago

yes. existing plos code, and ndreg will be very important. everything else is just icing for now.

On Sun, Jan 8, 2017 at 12:40 PM, Brandon Duderstadt < notifications@github.com> wrote:

Ok. I will focus on testing all of the existing PLOS code with will tonight then and we can touch base about where to go from here tomorrow morning.

On Jan 8, 2017 12:36 PM, "joshua vogelstein" notifications@github.com

wrote:

by the way - i recommend not using this clustering approach that you are planning on using. it is new and shiny, but not state of the art afaict.

On Sun, Jan 8, 2017 at 12:34 PM, Brandon Duderstadt < notifications@github.com> wrote:

Great. See you then.

On Jan 8, 2017 12:33 PM, "joshua vogelstein" <notifications@github.com

wrote:

yes, ok, let's do class at 10am tomorrow. get yourself and will on spiralscience.slack.com if you are not already

On Sun, Jan 8, 2017 at 12:30 PM, Brandon Duderstadt < notifications@github.com> wrote:

Will do. I should be in clark by 10 tomorrow, and Ill be there basically all day. Will is back as well, should I bring him with me? He will be working with me during intersession on all of this, so I think it would be beneficial if he came as well.

On Sun, Jan 8, 2017 at 12:26 PM, joshua vogelstein < notifications@github.com

wrote:

and this one.

On Sun, Jan 8, 2017 at 12:18 PM, Brandon Duderstadt < notifications@github.com> wrote:

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/NeuroDataDesign/pan-synapse/issues/10, or mute the thread https://github.com/notifications/unsubscribe-auth/ AACjcqDSGgcetlI1s6ZOcplkWEuFlY8Eks5rQRp2gaJpZM4LdveB .

-- the glass is all full: half water, half air. neurodata.io, jovo calendar https://calendar.google.com/calendar/embed?src=joshuav% 40gmail.com&ctz=America/New_York starting in 2017, i will be responding to emails approximately weekly, so that i can focus more on the people around me. thank you for your understanding.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/NeuroDataDesign/pan-synapse/ issues/10#issuecomment- 271165165, or mute the thread https://github.com/notifications/unsubscribe-auth/ AMsFhsYGZ41DSglLl0igPU2hrpkCLpmrks5rQRxHgaJpZM4LdveB .

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-- the glass is all full: half water, half air. neurodata.io, jovo calendar https://calendar.google.com/calendar/embed?src=joshuav% 40gmail.com&ctz=America/New_York starting in 2017, i will be responding to emails approximately weekly, so that i can focus more on the people around me. thank you for your understanding.

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-- the glass is all full: half water, half air. neurodata.io, jovo calendar https://calendar.google.com/calendar/embed?src=joshuav% 40gmail.com&ctz=America/New_York starting in 2017, i will be responding to emails approximately weekly, so that i can focus more on the people around me. thank you for your understanding.

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-- the glass is all full: half water, half air. neurodata.io, jovo calendar https://calendar.google.com/calendar/embed?src=joshuav%40gmail.com&ctz=America/New_York starting in 2017, i will be responding to emails approximately weekly, so that i can focus more on the people around me. thank you for your understanding.