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NeuroDataDesign / seelviz-f16s17

Undergraduate repository for Albert, Luke, and Tony
Apache License 2.0
1 stars 2 forks source link

November 14th Deliverables #48

Closed mlee156 closed 7 years ago

mlee156 commented 7 years ago

committed

task deliverable
By end of today: Obtain image of the general brain region and report back to Jovo asap Messaged Jovo (see here)
Find the 100,000 bright points for all 3 of Ailey's brains - deliverable is csv files (https://github.com/NeuroDataDesign/seelviz/issues/44)
Make Website clearer and include instructions for Brain orientation http://128.220.11.5:8090/ http://128.220.11.5:8100/
Update registration to Kwame's newest registration https://hub.docker.com/r/lkzhu1/clweb/tags/

reach

task deliverable
Obtain a preliminary estimate of connectivity between regions based on the existing brightest points approach https://github.com/NeuroDataDesign/seelviz/blob/gh-pages/Jupyter/Aut1367_region_color_connectivity.html https://github.com/NeuroDataDesign/seelviz/blob/gh-pages/Jupyter/preliminary_connectivity_brain_aut1367.ipynb
Ingest 100,00 brightest points and overlay them on both views of the brain
Ingest the ARA as a RAMON object so that you can see the names of each region
Make ndviz projects showing all of Ailey's brains (AUT) with overlays of the atlas in both native and ARA orientation
mlee156 commented 7 years ago

@gkiar @jovo

jovo commented 7 years ago

this is a big improvement i think.
i think it would be even better if the deliverable were stated clearly and concisely. eg, for the 100,000 brightest points, i'll get a csv?

rmarren1 commented 7 years ago

@jonl1096 It might be easier to see the database links on the website if they were in a table

@alee156 The website doesn't didn't open for me

gkiar commented 7 years ago
tsunwong123 commented 7 years ago

@alee156 yeah the website didn't open for any of us. you should probably double check that!

ebridge2 commented 7 years ago

@alee156 same for me :( other notes, would be interesting to see some details on the connectivity metric you used for making those edges @lukezhu1

mlee156 commented 7 years ago

I shut down the server after we presented, I just opened it up again @jonl1096 can you reopen your server as well

mnatenz1 commented 7 years ago

@alee156 The website's basic content does not adjust correctly to changes in screen dimension (ex. laptop vs. tablet vs. mobile phone).