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NeuroDataDesign / seelviz-f16s17

Undergraduate repository for Albert, Luke, and Tony
Apache License 2.0
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Deliverables for February 6th #63

Closed mlee156 closed 7 years ago

mlee156 commented 7 years ago

Committed

status deliverable notes
👍 ClearMap's "Spot Detection" algorithm analysis., docker @alee156
Graph estimation and matching algorithm analysis. Graph Matching algorithm notebook @lukezhu1
👍 Create cell detection section in pipeline and implement discriminability if possible. Connectivity notebook, Connectivity Code, # cells per region csv, reworked pipeline code, New brain w/ regions Old Brain @jonl1096
👍 ClearMap's "Ilastik" algorithm analysis -> if same as regular Ilastik then implementation. @toekneesunshine
jovo commented 7 years ago

@jonl1096 if i understand correctly, you will show the results of your pipeline, which eats a CLARITY volume, and spits out:

  1. # of cells per region
  2. adjacency matrix of connectivity between regions.

even better, a visualization of both!

other guys: each of you will present something following this: https://github.com/neurodata/checklists/blob/master/methods_paper.md

skipping the sections i skipped in the demo here: https://github.com/neurodata/checklists/blob/master/Tutorials/MATLAB/algs_example/methods_paper_example.md