Deliverables for Monday March 27th

[mlee156]

@alee156 & @lukezhu1

• [x] By Thursday: Show Greg both our numpy list of lists, and a sampled area where we generate fibers https://github.com/NeuroDataDesign/seelviz/blob/gh-pages/Jupyter/fibers_plt.ipynb

status	deliverable	notes
👍	For Monday during break: Show progress of various implementations. After hearing back from Ailey (about hyper-parameters), talk with Greg about figuring out how to set hyper-parameters in Python/MATLAB code.	@toekneesunshine @jonl1096
👍	For class meeting (Monday, March 27): Finish implementing new structure tensor code into Python pipeline. Brain with edges, Density graph, Density Heatmap, Region graph, Region Centers graph, Working Version of Structure Tensor Script, Old brain plot	@toekneesunshine @jonl1096
:thumbsup:	For Monday during break: Check dimensions of outputs from Dipy's EuDX example and fix the bug in visualization that caused the cube-like tiff stack to flatten out Edit: Show Greg 100 random fibers from the cube-like volume.	@alee156 @lukezhu1
👍	For class meeting (Monday, March 27): Need to determine next steps after meeting with Greg during break. full brain Example brain comparison harddi comparison cross check	@alee156 @lukezhu1

Note: Pivoted because it was very clear evec/eval generation was not working

[toekneesunshine]

@gkiar

[gkiar]

@alee156 @lukezhu1 to be clear: you're showing me the fibers, and we agreed you would visualize some subset of them. If the whole bundle didn't work last time, start with a single fiber and add more up to some saturation point when visualizing on your laptop.