Test new container build system

[stebo85]

10 applications to test the new build system:

• [x] https://github.com/NeuroDesk/neurocontainers/issues/155
• [x] https://github.com/NeuroDesk/neurocontainers/issues/121
• [ ] https://github.com/NeuroDesk/neurocontainers/issues/243
• [x] https://github.com/NeuroDesk/neurocontainers/issues/46
• [ ] https://github.com/NeuroDesk/neurocontainers/issues/332
• [ ] https://github.com/NeuroDesk/neurocontainers/issues/567
• [ ] https://github.com/NeuroDesk/neurocontainers/issues/765
• [ ] https://github.com/NeuroDesk/neurocontainers/issues/766
• [ ] https://github.com/orgs/NeuroDesk/discussions/428
• [x] https://github.com/NeuroDesk/neurocontainers/issues/767

[Vbitz]

After looking at the list I'll do them in this order (roughly).

1. qMRLab - Only needs GNU Octave
2. BrainNetViewer - Needs glibc + MatLab Runtime
3. Radtract - Needs Python-based dependencies.
4. Synthstrip - Needs Python-based dependencies.
5. VMTK - Installed using Conda.
6. brainageR - Needs R, FSL, SPM12 (via Octave).
7. hcpasl - Needs FSL, Connectome Workbench, FreeSurfer, HCPPipelines, and Conda.
8. PreQual - Needs FSL, Convert3D, ANTs, FreeSurfer, MatLab, MRTrix3
9. XCP-D - Needs AtlasPack, Conda, AFNI, Connectome Workbench, FSL, FreeSurfer, ANTs, SVGO, bids-validator, TensorFlow, Pandoc.
10. cpac - It's a container launcher frontend with Docker. Not sure how well this will fit into NeuroDesk?

[stebo85]

great - I agree with your priority list :) Let's see what interesting things we run into.