Closed dkp closed 8 months ago
Dear @dkp,
we can unfortunately not reproduce the problem:
Could you describe in more detail how you are starting Neurodesk and how you start fsl?
Dear @dkp,
Could you please provide more details on how you got this error and which Neurodesk link you used exactly?
Thank you Steffen
Thank you so much for your responsiveness and patience!
I went to play.neurodesk.org=>U.S.West. If I select Neurodesktop=>RDP (dynamic resolution), then everything works fine.
However, apparently if I select VNC (fixed resolution), then I get this error:
Error in startup script: no such variable
(read trace on "env(USER)")
invoked from within
"set USER $env(USER)"
(file "/opt/fsl-6.0.7.4/tcl/fslstart.tcl" line 6)
invoked from within
"source [ file dirname [ info script ] ]/fslstart.tcl"
(file "/opt/fsl-6.0.7.4/tcl/fsl.tcl" line 71)
invoked from within
"source ${FSLDIR}/tcl/${origname}.tcl"
(file "/opt/fsl-6.0.7.4/bin/fsl" line 20)
I hope that helps. I had not realized the interaction.
Dear @dkp,
That's extremely helpful - thank you so much for finding this issue. We are looking into it.
@aswinnarayanan - any ideas?
Thank you Steffen
RDP:
VNC:
Dear @dkp,
We found the problem and it's fixed now. There will be a new release soon which includes this fix.
Thank you for finding and reporting it Steffen
Cool! Thank you!
Dear @dkp,
Thank you again for reporting this problem. The new release is out now and the problem is fixed :)
Thank you Steffen
Environment: Started neurodesktop on Binder
From the terminal, I can run command line tools like fslinfo. I can also start fsleyes, but when I type
fsl
, the gui does not start, and instead complains:fsl-6.0.7.4:~$ pwd /home/jovyan fsl-6.0.7.4:~$ fsl Error in startup script: no such variable (read trace on "env(USER)") invoked from within "set USER $env(USER)" (file "/opt/fsl-6.0.7.4/tcl/fslstart.tcl" line 6) invoked from within "source [ file dirname [ info script ] ]/fslstart.tcl" (file "/opt/fsl-6.0.7.4/tcl/fsl.tcl" line 71) invoked from within "source ${FSLDIR}/tcl/${origname}.tcl" (file "/opt/fsl-6.0.7.4/bin/fsl" line 20)
Thank you, Dianne