NeuroML / Documentation

Source repository for NeuroML documentation.
https://docs.neuroml.org
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Add a page on using morphology reconstructions in NeuroML #104

Closed sanjayankur31 closed 1 year ago

sanjayankur31 commented 2 years ago

Things like SWC and NeuroMorpho.

The caveat is that these reconstructions are not made with modelling in mind, so they usually have various issues that prevent them from being used "as is". So the documentation page will perhaps show an example and walk through the various issues and how these must be manually modified before they can be used in NeuroML.

If the neuroml validator etc. can show warnings/errors to help users make the necessary changes, that'll be very useful

Neuroconstruct already allows users to do all of this interactively. So the code exists.

See also https://github.com/NeuroML/pyNeuroML/issues/89

This is an important issue that will prevent experimentalists from using NeuroML, so higher priority.

sanjayankur31 commented 2 years ago

TODO: Notebooks that walk through some examples

sanjayankur31 commented 2 years ago

the page will have:

pgleeson commented 1 year ago

Morphology page added