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NeuroML / NeuroMLWebsite

The NeuroML homepage. Note: main NeuroML docs now at https://docs.neuroml.org & source of those at https://github.com/NeuroML/Documentation
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Add NetPyNE to the NeuroML website software page #17

Closed joewgraham closed 4 years ago

joewgraham commented 4 years ago

It would be great to have NetPyNE listed as a NeuroML-compatible software tool on the website tool support page: https://neuroml.org/tool_support

Here's a link to the NetPyNE documentation: http://netpyne.org/

To the logo: http://netpyne.org/_static/logo.png

Here's an appropriate blurb:

NetPyNE is a Python package to facilitate the development, simulation, parallelization, analysis, and optimization of biological neuronal networks using the NEURON simulator. NetPyNE can import from and export to NeuroML.

The NetPyNE Graphical User Interface allows people with no coding experience to develop, run, analyze, and export simulations of neuronal networks from their web browser.

pgleeson commented 4 years ago

Yes, I've been planning an overhaul of the tools page for a while. Will certainly include NetPyNE there.

scrook commented 4 years ago

We have a student here who I asked to make this addition. He can make such small changes until Padraig has time for an overhaul.

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From: Padraig Gleeson notifications@github.com Sent: Wednesday, May 20, 2020 6:58:47 AM To: NeuroML/NeuroMLWebsite NeuroMLWebsite@noreply.github.com Cc: Subscribed subscribed@noreply.github.com Subject: Re: [NeuroML/NeuroMLWebsite] Add NetPyNE to the NeuroML website software page (#17)

Yes, I've been planning an overhaul of the tools page for a while. Will certainly include NetPyNE there.

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ChihweiLHBird commented 4 years ago

Thanks, and I will finish this soon.

pgleeson commented 4 years ago

I knew I had opened an issue related to this before... A full list of the tools that need to be added along with suggestions to reorganise the page are at: https://github.com/NeuroML/NeuroML2/issues/127

ChihweiLHBird commented 4 years ago

It would be great to have NetPyNE listed as a NeuroML-compatible software tool on the website tool support page: https://neuroml.org/tool_support

Here's a link to the NetPyNE documentation: http://netpyne.org/

To the logo: http://netpyne.org/_static/logo.png

Here's an appropriate blurb:

NetPyNE is a Python package to facilitate the development, simulation, parallelization, analysis, and optimization of biological neuronal networks using the NEURON simulator. NetPyNE can import from and export to NeuroML.

The NetPyNE Graphical User Interface allows people with no coding experience to develop, run, analyze, and export simulations of neuronal networks from their web browser.

Hi,

Cloud you please tell me that does it support morphologically detailed single cells; does it support networks of morphologically detailed cells; does it support models containing active membrane conductances through ion channels; does it support (large scale) networks of single compartment neurons; does it includes support for NeuroML v2.0?

scrook commented 4 years ago

Yes to all.

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Mailcode: 1804 Tempe, Arizona 85287-1804 email: sharon.crook@asu.edu phone: 480-965-0403 web: https://iconlab.asu.edu twitter: @SharCrook

From: Zhiwei notifications@github.com Sent: Thursday, May 21, 2020 4:01 PM To: NeuroML/NeuroMLWebsite Cc: Sharon Crook; Comment Subject: Re: [NeuroML/NeuroMLWebsite] Add NetPyNE to the NeuroML website software page (#17)

It would be great to have NetPyNE listed as a NeuroML-compatible software tool on the website tool support page: https://neuroml.org/tool_supporthttps://urldefense.proofpoint.com/v2/url?u=https-3A__neuroml.org_tool-5Fsupport&d=DwMFaQ&c=l45AxH-kUV29SRQusp9vYR0n1GycN4_2jInuKy6zbqQ&r=Z0wzXp4z-vXT9mU9zgyqovkrpVOWZNNkmL477d3RPfc&m=vDJQBL_34Yf8DCP7CPsQaZUEANhsUxvm4slnz7e7BvE&s=lSeyrJCgGK1sUCLEipwgav7eeepiR4-iCmGJDFUPef8&e=

Here's a link to the NetPyNE documentation: http://netpyne.org/https://urldefense.proofpoint.com/v2/url?u=http-3A__netpyne.org_&d=DwMFaQ&c=l45AxH-kUV29SRQusp9vYR0n1GycN4_2jInuKy6zbqQ&r=Z0wzXp4z-vXT9mU9zgyqovkrpVOWZNNkmL477d3RPfc&m=vDJQBL_34Yf8DCP7CPsQaZUEANhsUxvm4slnz7e7BvE&s=arWVGWHfE1vhbyGs-yqrtZDIJJRF2Q2BFi75hhsR_dE&e=

To the logo: http://netpyne.org/_static/logo.pnghttps://urldefense.proofpoint.com/v2/url?u=http-3A__netpyne.org_-5Fstatic_logo.png&d=DwMFaQ&c=l45AxH-kUV29SRQusp9vYR0n1GycN4_2jInuKy6zbqQ&r=Z0wzXp4z-vXT9mU9zgyqovkrpVOWZNNkmL477d3RPfc&m=vDJQBL_34Yf8DCP7CPsQaZUEANhsUxvm4slnz7e7BvE&s=4fTviryf_GDoocrTYrGbbaftaB2VPb63Tz3gffpZRzo&e=

Here's an appropriate blurb:

NetPyNE is a Python packagehttps://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_Neurosim-2Dlab_netpyne&d=DwMFaQ&c=l45AxH-kUV29SRQusp9vYR0n1GycN4_2jInuKy6zbqQ&r=Z0wzXp4z-vXT9mU9zgyqovkrpVOWZNNkmL477d3RPfc&m=vDJQBL_34Yf8DCP7CPsQaZUEANhsUxvm4slnz7e7BvE&s=UupNP61okubUIYYcqRuzREAnxmMeAjg1czcC1wttZUI&e= to facilitate the development, simulation, parallelization, analysis, and optimization of biological neuronal networks using the NEURON simulator. NetPyNE can import from and export to NeuroML.

The NetPyNE Graphical User Interfacehttps://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_MetaCell_NetPyNE-2DUI_wiki&d=DwMFaQ&c=l45AxH-kUV29SRQusp9vYR0n1GycN4_2jInuKy6zbqQ&r=Z0wzXp4z-vXT9mU9zgyqovkrpVOWZNNkmL477d3RPfc&m=vDJQBL_34Yf8DCP7CPsQaZUEANhsUxvm4slnz7e7BvE&s=x9CuIY4CxSEdgwTDHt8NKsiv0mBQ1EgRdfUzWg3en2A&e= allows people with no coding experience to develop, run, analyze, and export simulations of neuronal networks from their web browser.

Hi,

Cloud you please tell me that does it support morphologically detailed single cells; does it support networks of morphologically detailed cells; does it support models containing active membrane conductances through ion channels; does it support (large scale) networks of single compartment neurons; does it includes support for NeuroML v2.0?

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ChihweiLHBird commented 4 years ago

Pull request created. https://github.com/NeuroML/NeuroMLWebsite/pull/18

pgleeson commented 4 years ago

Updated on live site.

joewgraham commented 4 years ago

Looks great, thanks!