Closed sanjayankur31 closed 1 year ago
@sanjayankur31 Is there an example of a LEMS file commited somewhere using this?
Not yet, I had tweaked one of the example files to test it out:
<Lems>
<!--
This LEMS file has been automatically generated using PyNeuroML v1.0.8 (libNeuroML v0.5.3)
-->
<!-- Specify which component to run -->
<Target component="HHSim" reportFile="report.txt"/>
<!-- Include core NeuroML2 ComponentType definitions -->
<Include file="Cells.xml"/>
<Include file="Networks.xml"/>
<Include file="Simulation.xml"/>
<Include file="NML2_SingleCompHHCell.nml"/>
<Include file="NaConductance.channel.nml"/>
<Include file="KConductance.channel.nml"/>
<Include file="LeakConductance.channel.nml"/>
<Simulation id="HHSim" length="500ms" step="0.05ms" target="net1" seed="12345"> <!-- Note seed: ensures same random numbers used every run -->
<Meta for="neuron" method="cvode" abs_tolerance="0.0001" rel_tolerance="0.001" />
<Display id="display0" title="Voltages" timeScale="1ms" xmin="-50.0" xmax="550.0" ymin="-90" ymax="50">
<Line id="v" quantity="hhpop[0]/v" scale="1mV" color="#ffffff" timeScale="1ms"/>
</Display>
<OutputFile id="Volts_file" fileName="HHSim.v.dat">
<OutputColumn id="v" quantity="hhpop[0]/v"/>
</OutputFile>
<EventOutputFile id="Events_file" fileName="HHSim.v.spikes" format="ID_TIME">
<EventSelection id="0" select="hhpop[0]" eventPort="spike"/>
</EventOutputFile>
</Simulation>
</Lems>
This is the bit that needs adding to any existing LEMS file:
<Meta for="neuron" method="cvode" abs_tolerance="0.0001" rel_tolerance="0.001" />
@sanjayankur31 Merging to experimental to test