Closed jonrkarr closed 1 year ago
Environment
The same environment, except with NetPyNe 1.0.0.2, works fine.
jNeuroML >> (INFO) NRN Error >>> Traceback (most recent call last): jNeuroML >> (INFO) NRN Error >>> File "/tmp/tmpfxjbyyg4/fixtures/tmpddygkrlp_netpyne.py", line 193, in <module> jNeuroML >> (INFO) NRN Error >>> ns.run() jNeuroML >> (INFO) NRN Error >>> File "/tmp/tmpfxjbyyg4/fixtures/tmpddygkrlp_netpyne.py", line 128, in run jNeuroML >> (INFO) NRN Error >>> self.gids = sim.importNeuroML2SimulateAnalyze(self.nml2_file_name,self.simConfig) jNeuroML >> (INFO) NRN Error >>> File "/home/jonrkarr/.local/lib/python3.9/site-packages/netpyne/sim/wrappers.py", line 558, in importNeuroML2SimulateAnalyze jNeuroML >> (INFO) NRN Error >>> return sim.importNeuroML2(fileName, simConfig, simulate=True, analyze=True) jNeuroML >> (INFO) NRN Error >>> File "/home/jonrkarr/.local/lib/python3.9/site-packages/netpyne/conversion/neuromlFormat.py", line 1616, in importNeuroML2 jNeuroML >> (INFO) NRN Error >>> stims = sim.net.addStims() # add external stimulation to cells (IClamps etc) jNeuroML >> (INFO) NRN Error >>> File "/home/jonrkarr/.local/lib/python3.9/site-packages/netpyne/network/stim.py", line 116, in addStims jNeuroML >> (INFO) NRN Error >>> postCell.addStim(params) # call cell method to add connection jNeuroML >> (INFO) NRN Error >>> File "/home/jonrkarr/.local/lib/python3.9/site-packages/netpyne/cell/compartCell.py", line 1104, in addStim jNeuroML >> (INFO) NRN Error >>> setattr(stim, stimParamName, stimParamValue)
Thanks for reporting @jonrkarr. There is a PR open on the netpyne repo which should fix this issue https://github.com/suny-downstate-medical-center/netpyne/pull/663
cc @salvadord
PR above merged.
Environment
The same environment, except with NetPyNe 1.0.0.2, works fine.