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NeuroML / pyNeuroML

A single package in Python unifying scripts and modules for reading, writing, simulating and analysing NeuroML2/LEMS models.
https://docs.neuroml.org/Userdocs/Software/pyNeuroML.html
GNU Lesser General Public License v3.0
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Feat/ run tellurium #300

Closed robertvi closed 4 months ago

robertvi commented 4 months ago

Feature added: pynml -run-tellurium [-outputdir output_dir]

robertvi commented 4 months ago

Probably should pull the other development changes into my fork before doing this PR!

pgleeson commented 4 months ago

Also @robertvi, I've just opened a pull request to development with a new jnml jar which updates the generated SED-ML file to include elements to write the simulation output to file. I'll merge that once the tests pass or you can just pull in the changes from the experimental brainch.