Open Sietse20 opened 6 months ago
sanjayankur31
commented
6 months ago Could you try another python version to see if that perhaps helps? Maybe python3.9 for a start?
I'll check how one can get some debugging info from pyqt bits, it's almost certainly something there that either we or vispy have missed.
Sietse20
commented
6 months ago I have tried python 3.9, but it still doesn't work :(
On Mon, 13 May 2024 at 16:11, Ankur Sinha @.***> wrote:
Could you try another python version to see if that perhaps helps? Maybe python3.9 for a start?
I'll check how one can get some debugging info from pyqt bits, it's almost certainly something there that either we or vispy have missed.
— Reply to this email directly, view it on GitHub https://github.com/NeuroML/pyNeuroML/issues/358#issuecomment-2107682772, or unsubscribe https://github.com/notifications/unsubscribe-auth/BCRUBZKVT56AOZTGZ5DEJZDZCDC2DAVCNFSM6AAAAABHUGVL42VHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDCMBXGY4DENZXGI . You are receiving this because you authored the thread.Message ID: @.***>
sanjayankur31
commented
6 months ago I can reproduce this on a windows 11 machine, but I haven't a clue how to debug it. There are no errors, no warnings, no output at all, so I don't even know where to start currently :(
Describe the bug When using the plot_interactive_3D function from pyneuroml.plot.PlotMorphologyVispy, the window that pops up contains a snapshot of the neuron that is not interactive. I can use the R button to rotate the 3D model, but any mouse input does not work.
To Reproduce I used the following code to try and plot a neuroml file of choice:
from pyneuroml.plot.PlotMorphologyVispy import plot_interactive_3D plot_interactive_3D("example.cell.nml")
Expected behavior I expected an interactive window to pop up, in which I could use mouse movements to rotate and zoom into the 3D model of the neuron to investigate its morphology.
Observed behavior Only the R button seemed to work in the interactive window. Any mouse movement did not result in an output.
System information:
pynml --help) Package Versionairspeed 0.6.0 asttokens 2.4.0 attrs 23.2.0 backcall 0.2.0 blosc2 2.6.2 cachetools 5.3.3 cattrs 23.2.3 colorama 0.4.6 comm 0.1.4 contourpy 1.2.1 cycler 0.12.1 debugpy 1.8.0 decorator 5.1.1 dill 0.3.8 dnspython 2.6.1 docstring_parser 0.16 executing 1.2.0 fonttools 4.51.0 freetype-py 2.4.0 graphviz 0.20.3 h5py 3.11.0 hsluv 5.0.4 ipykernel 6.25.2 ipython 8.15.0 jedi 0.19.0 jupyter_client 8.3.1 jupyter_core 5.3.1 kiwisolver 1.4.5 libNeuroML 0.5.8 lxml 5.2.2 matplotlib 3.8.4 matplotlib-inline 0.1.6 matplotlib-scalebar 0.8.1 modelspec 0.3.4 mpmath 1.3.0 msgpack 1.0.8 natsort 8.4.0 ndindex 1.8 nest-asyncio 1.5.7 networkx 3.3 neuromllite 0.5.9 numexpr 2.10.0 numpy 1.26.4 packaging 23.1 parso 0.8.3 pickleshare 0.7.5 pillow 10.3.0 pip 24.0 platformdirs 3.10.0 ppft 1.7.6.8 progressbar 2.5 progressbar2 4.4.2 prompt-toolkit 3.0.39 psutil 5.9.5 pure-eval 0.2.2 py-cpuinfo 9.0.0 Pygments 2.16.1 PyLEMS 0.6.7 pymongo 4.7.2 pyNeuroML 1.2.12 PyOpenGL 3.1.7 PyOpenGL-accelerate 3.1.7 pyparsing 3.1.2 PyQt6 6.7.0 PyQt6-Qt6 6.7.0 PyQt6-sip 13.6.0 python-dateutil 2.8.2 python-utils 3.8.2 pywin32 306 PyYAML 6.0.1 pyzmq 25.1.1 scipy 1.13.0 setuptools 69.5.1 six 1.16.0 stack-data 0.6.2 sympy 1.12 tables 3.9.2 tabulate 0.9.0 tornado 6.3.3 traitlets 5.9.0 typing_extensions 4.11.0 vispy 0.14.2 wcwidth 0.2.6 wheel 0.43.0